Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

18896083 .. 18899052

Gene Structure 2970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATCGGTTTTATGATATTGATGTACAACTTTGAAACTTATTTGGATTTCCGCCAACATGCTGCTCTGAAACTTCCAACACTTCCTAAAACTTTGGAAGGAGTAATCAGCCAAGAAAAGTTTGAGAAGTCGAGAGCCTACTGTCTTGAAAGAAGCAACTTCCATTTTGTTCATGATTTTGTGACCTTTCTTATGGACTCAGCAATTTTTGTTCTATCGGATTTTGCCTTGGTTTTGGAAGGAGACTTTGTAGTCTTAGCAGGCCTCAATGCCCAAAATGAAATACTACATACCCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGAAAGGAGGTGCATACTTGGTCATTTATCTTTGGGCGTTCATGCTTGTCCTCTCTTTTGTGATGATGACGATCTACCCTATTCTAATAGCCCCACTTTTTAACAAGTTCACCCCTCTTCCTGAGGGTCAGCTGAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGCAACGCCTATATGTATGGATTTTTTAAGAACAAGAGGATTGTACTTTATGATACACTGATCCAGCAGTGTAGAAATGATGAGGAAATTGTAGCTGTTCTAGCGCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTGTACTTATTTATTTCTACGCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCGCTTCGAGCTAGTCTTGTTAGACTACAGGAAGAGAATTTGTCAGCTATGAATACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

329

Amino Acids

37.74

Weight (kDa)

6.67

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 116	1.2e-10	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48_N	PF16491	111 - 153	2.4e-10	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	156 - 243	1.1e-26	Peptidase family M48
Peptidase_M48	PF01435	244 - 323	1.7e-10	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	3 cut(s)	562, 628, 896
AcsI	RAATTY	2 cut(s)	800, 880
AdeI	CACNNNGTG	1 cut(s)	712
AfaI	GTAC	5 cut(s)	50, 618, 716, 765, 911
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	59, 173, 532, 800
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	562, 628, 896
AoxI	GGCC	2 cut(s)	286, 688
ApeKI	GCWGC	3 cut(s)	86, 733, 956
ApoI	RAATTY	2 cut(s)	800, 880
AspLEI	GCGC	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	454, 977
AxyI	CCTNAGG	1 cut(s)	474
BbvCI	CCTCAGC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	73, 745, 943
BccI	CCATC	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	5 cut(s)	674, 686, 761, 855, 941
BfmI	CTRYAG	1 cut(s)	869
BisI	GCNGC	3 cut(s)	87, 734, 957
BlsI	GCNGC	3 cut(s)	88, 735, 958
BmsI	GCATC	1 cut(s)	802
Bpu10I	CCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	252, 905
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse21I	CCTNAGG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	252, 905
BseGI	GGATG	1 cut(s)	931
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	237, 465, 476
BseXI	GCAGC	3 cut(s)	73, 745, 943
BshFI	GGCC	2 cut(s)	288, 690
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	288, 690
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	423, 554, 633, 901
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	288, 690
BspCNI	CTCAG	3 cut(s)	236, 466, 477
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	3 cut(s)	562, 628, 896
BsrGI	TGTACA	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	252, 905
BssMI	GATC	4 cut(s)	423, 554, 633, 901
BssT1I	CCWWGG	2 cut(s)	252, 905
Bst4CI	ACNGT	2 cut(s)	167, 710
Bst6I	CTCTTC	3 cut(s)	474, 847, 870
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	286, 507, 775
BstDEI	CTNAG	5 cut(s)	223, 280, 474, 485, 822
BstF5I	GGATG	1 cut(s)	931
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	4 cut(s)	426, 557, 636, 904
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	4 cut(s)	423, 554, 633, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 674
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	869
BstV1I	GCAGC	3 cut(s)	73, 745, 943
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	288, 690
BtsCI	GGATG	1 cut(s)	931
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	3 cut(s)	629, 647, 715
Cac8I	GCNNGC	3 cut(s)	286, 507, 775
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	679
Csp6I	GTAC	5 cut(s)	49, 617, 715, 764, 910
CviAII	CATG	4 cut(s)	83, 197, 394, 680
CviQI	GTAC	5 cut(s)	49, 617, 715, 764, 910
DdeI	CTNAG	5 cut(s)	223, 280, 474, 485, 822
DpnI	GATC	4 cut(s)	425, 556, 635, 903
DpnII	GATC	4 cut(s)	423, 554, 633, 901
DraIII	CACNNNGTG	1 cut(s)	712
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	3 cut(s)	474, 847, 870
EarI	CTCTTC	3 cut(s)	474, 847, 870
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	252, 905
Eco147I	AGGCCT	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	252, 905
ErhI	CCWWGG	2 cut(s)	252, 905
FaeI	CATG	4 cut(s)	86, 200, 397, 683
FatI	CATG	4 cut(s)	82, 196, 393, 679
Fnu4HI	GCNGC	3 cut(s)	87, 734, 957
FokI	GGATG	1 cut(s)	918
Fsp4HI	GCNGC	3 cut(s)	87, 734, 957
FspBI	CTAG	5 cut(s)	674, 686, 761, 855, 941
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	3 cut(s)	87, 734, 957
HaeIII	GGCC	2 cut(s)	288, 690
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	4 cut(s)	86, 200, 397, 683
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	454, 977
Hpy166II	GTNNAC	3 cut(s)	462, 715, 766
Hpy188I	TCNGA	2 cut(s)	93, 244
Hpy188III	TCNNGA	4 cut(s)	156, 170, 197, 473
Hpy8I	GTNNAC	3 cut(s)	462, 715, 766
HpyAV	CCTTC	2 cut(s)	116, 257
HpyCH4III	ACNGT	2 cut(s)	167, 710
HpyCH4V	TGCA	2 cut(s)	365, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 674
HpyF3I	CTNAG	5 cut(s)	223, 280, 474, 485, 822
Hsp92II	CATG	4 cut(s)	86, 200, 397, 683
HspAI	GCGC	1 cut(s)	677
Kzo9I	GATC	4 cut(s)	423, 554, 633, 901
LpnPI	CCDG	7 cut(s)	270, 318, 486, 650, 767, 791, 857
Lsp1109I	GCAGC	3 cut(s)	73, 745, 943
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	5 cut(s)	674, 686, 761, 855, 941
MaeIII	GTNAC	2 cut(s)	205, 569
MalI	GATC	4 cut(s)	425, 556, 635, 903
MboI	GATC	4 cut(s)	423, 554, 633, 901
MboII	GAAGA	5 cut(s)	461, 504, 544, 834, 887
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	6 cut(s)	228, 495, 660, 800, 880, 960
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	3 cut(s)	453, 600, 702
MspA1I	CMGCKG	1 cut(s)	484
MunI	CAATTG	1 cut(s)	960
MwoI	GCNNNNNNNGC	2 cut(s)	329, 674
NdeII	GATC	4 cut(s)	423, 554, 633, 901
NlaIII	CATG	4 cut(s)	86, 200, 397, 683
NmeAIII	GCCGAG	2 cut(s)	815, 893
NmuCI	GTSAC	2 cut(s)	205, 569
NspI	RCATGY	1 cut(s)	86
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	88, 735, 958
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	484
RsaI	GTAC	5 cut(s)	50, 618, 716, 765, 911
RsaNI	GTAC	5 cut(s)	49, 617, 715, 764, 910
SaqAI	TTAA	3 cut(s)	453, 600, 702
SatI	GCNGC	3 cut(s)	87, 734, 957
Sau3AI	GATC	4 cut(s)	423, 554, 633, 901
SchI	GAGTC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	869
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	6 cut(s)	228, 495, 660, 800, 880, 960
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	5 cut(s)	674, 686, 761, 855, 941
StuI	AGGCCT	1 cut(s)	288
StyI	CCWWGG	2 cut(s)	252, 905
TaaI	ACNGT	2 cut(s)	167, 710
TaqI	TCGA	3 cut(s)	155, 850, 945
TasI	AATT	6 cut(s)	228, 495, 660, 800, 880, 960
TatI	WGTACW	4 cut(s)	48, 616, 714, 763
Tru1I	TTAA	3 cut(s)	453, 600, 702
Tru9I	TTAA	3 cut(s)	453, 600, 702
TscAI	CASTG	3 cut(s)	636, 647, 715
TseFI	GTSAC	2 cut(s)	205, 569
TseI	GCWGC	3 cut(s)	86, 733, 956
Tsp45I	GTSAC	2 cut(s)	205, 569
TspDTI	ATGAA	4 cut(s)	185, 318, 382, 908
TspRI	CASTG	3 cut(s)	636, 647, 715
XapI	RAATTY	2 cut(s)	800, 880
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	5 cut(s)	674, 686, 761, 855, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.