Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

40892131 .. 40893992

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGAAGATTGTGTGGGGACGTTTGTGCATGTTACGATTTTGGAGATTTATAATGAGGAGAATGTTGTGGGTAACGGTGTTGTCTGGTAATGGTGTTGGTGGTGGTGGGTTTGGGTTTGGATGGCCTAGAGTGAATGGCTCCAATTCTAAGATCACTGATTTGCCATTTTCTCTCTACTCCACATTTGTGGTTGAGGCACGTCATGGTTTCAATAAGCAAATGATATGGTTATTCTTCAGAGATATGTTGAAAGGAATTTGCCTTATGGCTGTTCTTGGTCCATCAATTGTGTCTGCAATTATTGTGATTGTGCAGAAAGGAGGTGCTTACTTGGCCATTTATCTTTGGGGATTCATGTTTGTGCTCTCTCTTATTATGATGACCATCTACCCTATTCTAATAGCTCTACTCTTTAACAAGTTTACCCCTGTGAGTGTTCAATATAATTTTCACCAAACTAGAATCCATTTATCTTGTCATTGTATTCAGTTTTTTAGTCTAACTTTCCATGTTATGTGTAACAATAGCTTCCAAAGGGTTCGCTCAGGGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

186

Amino Acids

21.37

Weight (kDa)

10.58

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	50 - 141	5.8e-35	CAAX prenyl protease N-terminal, five membrane helices

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	214, 253, 443
AjiI	CACGTC	1 cut(s)	203
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	2 cut(s)	407, 531
AluI	AGCT	2 cut(s)	407, 531
Alw21I	GWGCWC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	125, 336
ApoI	RAATTY	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	3 cut(s)	117, 292, 395
BfaI	CTAG	2 cut(s)	129, 462
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	386
BseGI	GGATG	1 cut(s)	128
BseJI	GATNNNNATC	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	561
BseRI	GAGGAG	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	127, 338
BsiHKAI	GWGCWC	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	127, 338
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	127, 338
BspCNI	CTCAG	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	142
BssMI	GATC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	150, 547
BstF5I	GGATG	1 cut(s)	128
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	127, 338
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	281
CviAII	CATG	4 cut(s)	31, 206, 358, 512
CviJI	RGCY	6 cut(s)	127, 141, 272, 338, 407, 531
CviKI_1	RGCY	6 cut(s)	127, 141, 272, 338, 407, 531
DdeI	CTNAG	2 cut(s)	150, 547
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	223
FaeI	CATG	4 cut(s)	34, 209, 361, 515
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	30, 205, 357, 511
FokI	GGATG	1 cut(s)	135
FspBI	CTAG	2 cut(s)	129, 462
HaeIII	GGCC	2 cut(s)	127, 338
Hin1II	CATG	4 cut(s)	34, 209, 361, 515
HinfI	GANTC	2 cut(s)	354, 465
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	2 cut(s)	22, 202
HpyCH4V	TGCA	3 cut(s)	30, 299, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	150, 547
HpySE526I	ACGT	2 cut(s)	22, 202
Hsp92II	CATG	4 cut(s)	34, 209, 361, 515
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	3 cut(s)	72, 444, 534
MaeI	CTAG	2 cut(s)	129, 462
MaeII	ACGT	2 cut(s)	22, 202
MaeIII	GTNAC	3 cut(s)	33, 73, 521
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	19, 229
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	6 cut(s)	145, 258, 288, 300, 448, 556
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	3 cut(s)	51, 190, 317
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	2 cut(s)	188, 362
Msp20I	TGGCCA	1 cut(s)	338
MunI	CAATTG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	4 cut(s)	34, 209, 361, 515
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	354, 465
PsiI	TTATAA	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	188, 362
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	25, 205, 328, 409, 533
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	2 cut(s)	188, 362
Sse9I	AATT	6 cut(s)	145, 258, 288, 300, 448, 556
SspMI	CTAG	2 cut(s)	129, 462
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	2 cut(s)	25, 205
TasI	AATT	6 cut(s)	145, 258, 288, 300, 448, 556
TfiI	GAWTC	2 cut(s)	354, 465
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	2 cut(s)	129, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.