Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

49756369 .. 49757368

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGTCGGGCTTGAGACCCGTCACTATATATAGCCCTGGCAAAAACAATTTGCTTCTGACAAAACCTCTCTTCCTCTGTGCACCTCCTCCTCACTCAGCCATGGAGTTCCCCATCCTCGAAGCTGTGATTGGTTTCATGATATTAATGTACATCTTTGAGACTTATCTGGATACACGACAACATTCTGCCCTCAAGCTTCCAACCCTTCCCAAAACTTTGGAAGGAGTAATCAGCCAAGCGAAGTTTGAGAAGTCACGAGCCTACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

91

Amino Acids

10.26

Weight (kDa)

8.82

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	2 cut(s)	125, 199
AluI	AGCT	2 cut(s)	125, 199
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	10, 155
Alw44I	GTGCAC	1 cut(s)	81
ApaLI	GTGCAC	1 cut(s)	81
AseI	ATTAAT	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	10, 155
BfmI	CTRYAG	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	34, 179
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	37, 102
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	37, 102
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	78, 81
BseSI	GKGCMC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	10, 155
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	37, 102
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	10, 155
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	114
CciI	TCATGA	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	103, 139
CviJI	RGCY	7 cut(s)	12, 36, 101, 125, 199, 237, 263
CviKI_1	RGCY	7 cut(s)	12, 36, 101, 125, 199, 237, 263
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	106, 142
FaiI	YATR	5 cut(s)	29, 31, 33, 104, 140
FatI	CATG	2 cut(s)	102, 138
FokI	GGATG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	106, 142
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	139, 170, 258
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	218, 218
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	106, 142
LpnPI	CCDG	3 cut(s)	24, 51, 155
MaeIII	GTNAC	2 cut(s)	22, 255
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	7 cut(s)	78, 86, 96, 99, 102, 128, 203
MseI	TTAA	2 cut(s)	146, 274
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	2 cut(s)	106, 142
NmuCI	GTSAC	2 cut(s)	22, 255
PagI	TCATGA	1 cut(s)	138
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	146, 274
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	4 cut(s)	70, 88, 127, 201
SfcI	CTRYAG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	13, 194
SmoI	CTYRAG	2 cut(s)	13, 194
Sse9I	AATT	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	146, 274
Tru9I	TTAA	2 cut(s)	146, 274
TseFI	GTSAC	2 cut(s)	22, 255
Tsp45I	GTSAC	2 cut(s)	22, 255
TspDTI	ATGAA	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.