Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

51605419 .. 51627505

Gene Structure 22087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGTTCCCATTCTTAGAAGCAGTTATTGGTTTCATGATATTAATGTACATCTTTGAGACTTATCTGGATACACGGCAACATTCTGCCCTCAAGCTTCCAACCCTTCCCAAAACTTTGGAAGGAGTAATCAGCCAAGAGAAGTTTGAGAAGTCACGAGCCTACAGTCTTGAAAACAGCAACTTCCATTTTGTTCATGATTTTGTGACCTTACTTATGGACTCATCAATTTTGTTCTATCGGATTTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTGTAGTCTTAGCTGGCCTCAATGCCCAAAATGAAATACTACATACCCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGATCACAGACTTACCATTCTCTCTGTACTCCACATTTGTGATCGAGGCTCGTCATGGTTTCAATAACCAAACAATATGGTTGTTCTTGAAAGACATGTTAAAAGAAATTTGTCTTTCTGTTATTATTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTAGAGCTTCCTGAGGGTCAGCTGAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGCAATTGTACAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTGTACTTATTTATTTCTACGCAGATCCGTATGCTTTTACACTTCGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCTAAGTTTTGGGTTTGATACTCAACCAGTAATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCGCTTCGAGCTAGTCTTGTTAGACTACAGGAAGAGAATTTGTCAGCTATGAATACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

365

Amino Acids

41.63

Weight (kDa)

6.43

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 175	8.6e-46	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	213 - 359	7e-27	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AclWI	GGATC	3 cut(s)	619, 724, 1004
AcsI	RAATTY	3 cut(s)	465, 908, 988
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	6 cut(s)	50, 386, 640, 710, 873, 1019
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	173, 421, 448, 589, 908
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	3 cut(s)	53, 267, 833
AlwI	GGATC	3 cut(s)	619, 724, 1004
AoxI	GGCC	2 cut(s)	292, 682
ApeKI	GCWGC	1 cut(s)	1064
ApoI	RAATTY	3 cut(s)	465, 908, 988
AseI	ATTAAT	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	1085
AxyI	CCTNAGG	1 cut(s)	531
BauI	CACGAG	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	1051
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	53, 267, 833
BfaI	CTAG	5 cut(s)	668, 680, 869, 963, 1049
BfmI	CTRYAG	2 cut(s)	163, 977
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	1065
BlsI	GCNGC	1 cut(s)	1066
BmsI	GCATC	1 cut(s)	910
BpmI	CTGGAG	1 cut(s)	760
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	77, 560
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	251, 1013
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse1I	ACTGG	1 cut(s)	815
Bse21I	CCTNAGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	251, 1013
BseGI	GGATG	1 cut(s)	1039
BseMII	CTCAG	3 cut(s)	522, 533, 758
BseNI	ACTGG	1 cut(s)	815
BseXI	GCAGC	1 cut(s)	1051
BshFI	GGCC	2 cut(s)	294, 684
BsmAI	GTCTC	3 cut(s)	53, 267, 833
BsnI	GGCC	2 cut(s)	294, 684
Bso31I	GGTCTC	1 cut(s)	833
Bsp1407I	TGTACA	2 cut(s)	48, 638
Bsp143I	GATC	5 cut(s)	360, 399, 611, 729, 1009
BspANI	GGCC	2 cut(s)	294, 684
BspCNI	CTCAG	3 cut(s)	523, 534, 759
BspHI	TCATGA	3 cut(s)	36, 196, 673
BspPI	GGATC	3 cut(s)	619, 724, 1004
BspTNI	GGTCTC	1 cut(s)	833
BsrGI	TGTACA	2 cut(s)	48, 638
BsrI	ACTGG	1 cut(s)	815
BssECI	CCNNGG	2 cut(s)	251, 1013
BssMI	GATC	5 cut(s)	360, 399, 611, 729, 1009
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	251, 1013
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	167, 704
Bst6I	CTCTTC	2 cut(s)	955, 978
BstAUI	TGTACA	2 cut(s)	48, 638
BstC8I	GCNNGC	3 cut(s)	292, 564, 883
BstDEI	CTNAG	7 cut(s)	16, 286, 531, 542, 767, 791, 930
BstF5I	GGATG	1 cut(s)	1039
BstKTI	GATC	5 cut(s)	363, 402, 614, 732, 1012
BstMAI	GTCTC	3 cut(s)	53, 267, 833
BstMBI	GATC	5 cut(s)	360, 399, 611, 729, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 668
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	2 cut(s)	163, 977
BstV1I	GCAGC	1 cut(s)	1051
BstX2I	RGATCY	2 cut(s)	611, 729
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	2 cut(s)	611, 729
Bsu36I	CCTNAGG	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	294, 684
BtsCI	GGATG	1 cut(s)	1039
BtsIMutI	CAGTG	1 cut(s)	709
Cac8I	GCNNGC	3 cut(s)	292, 564, 883
CciI	TCATGA	3 cut(s)	36, 196, 673
Csp6I	GTAC	6 cut(s)	49, 385, 639, 709, 872, 1018
CviAII	CATG	5 cut(s)	37, 197, 413, 454, 674
CviQI	GTAC	6 cut(s)	49, 385, 639, 709, 872, 1018
DdeI	CTNAG	7 cut(s)	16, 286, 531, 542, 767, 791, 930
DpnI	GATC	5 cut(s)	362, 401, 613, 731, 1011
DpnII	GATC	5 cut(s)	360, 399, 611, 729, 1009
DraIII	CACNNNGTG	1 cut(s)	706
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	955, 978
EarI	CTCTTC	2 cut(s)	955, 978
Eco130I	CCWWGG	2 cut(s)	251, 1013
Eco31I	GGTCTC	1 cut(s)	833
Eco81I	CCTNAGG	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	251, 1013
ErhI	CCWWGG	2 cut(s)	251, 1013
FaeI	CATG	5 cut(s)	40, 200, 416, 457, 677
FatI	CATG	5 cut(s)	36, 196, 412, 453, 673
Fnu4HI	GCNGC	1 cut(s)	1065
FokI	GGATG	1 cut(s)	1026
Fsp4HI	GCNGC	1 cut(s)	1065
FspBI	CTAG	5 cut(s)	668, 680, 869, 963, 1049
GluI	GCNGC	1 cut(s)	1065
GsuI	CTGGAG	1 cut(s)	760
HaeIII	GGCC	2 cut(s)	294, 684
Hin1II	CATG	5 cut(s)	40, 200, 416, 457, 677
HindIII	AAGCTT	2 cut(s)	95, 692
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	1 cut(s)	1085
Hpy166II	GTNNAC	2 cut(s)	709, 874
Hpy188I	TCNGA	1 cut(s)	243
Hpy8I	GTNNAC	2 cut(s)	709, 874
HpyAV	CCTTC	2 cut(s)	116, 116
HpyCH4III	ACNGT	2 cut(s)	167, 704
HpyCH4V	TGCA	2 cut(s)	506, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 668
HpyF3I	CTNAG	7 cut(s)	16, 286, 531, 542, 767, 791, 930
Hsp92II	CATG	5 cut(s)	40, 200, 416, 457, 677
Kzo9I	GATC	5 cut(s)	360, 399, 611, 729, 1009
Lsp1109I	GCAGC	1 cut(s)	1051
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	5 cut(s)	668, 680, 869, 963, 1049
MaeIII	GTNAC	3 cut(s)	153, 205, 626
MalI	GATC	5 cut(s)	362, 401, 613, 731, 1011
MboI	GATC	5 cut(s)	360, 399, 611, 729, 1009
MboII	GAAGA	5 cut(s)	274, 561, 601, 942, 995
MfeI	CAATTG	2 cut(s)	634, 1068
MflI	RGATCY	2 cut(s)	611, 729
MluCI	AATT	9 cut(s)	228, 465, 516, 552, 634, 654, 908, 988, 1068
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	101, 305, 397, 526, 537, 584, 643, 958, 1056
MseI	TTAA	3 cut(s)	44, 458, 696
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	541
MunI	CAATTG	2 cut(s)	634, 1068
MwoI	GCNNNNNNNGC	2 cut(s)	335, 668
NdeII	GATC	5 cut(s)	360, 399, 611, 729, 1009
NlaIII	CATG	5 cut(s)	40, 200, 416, 457, 677
NmeAIII	GCCGAG	2 cut(s)	923, 1001
NmuCI	GTSAC	3 cut(s)	153, 205, 626
NspI	RCATGY	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	3 cut(s)	36, 196, 673
PciI	ACATGT	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	1066
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	453
PshBI	ATTAAT	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	611, 729
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	6 cut(s)	50, 386, 640, 710, 873, 1019
RsaNI	GTAC	6 cut(s)	49, 385, 639, 709, 872, 1018
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	44, 458, 696
SatI	GCNGC	1 cut(s)	1065
Sau3AI	GATC	5 cut(s)	360, 399, 611, 729, 1009
SchI	GAGTC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	910
SfcI	CTRYAG	2 cut(s)	163, 977
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	92, 575
SmoI	CTYRAG	2 cut(s)	92, 575
Sse9I	AATT	9 cut(s)	228, 465, 516, 552, 634, 654, 908, 988, 1068
SspMI	CTAG	5 cut(s)	668, 680, 869, 963, 1049
StyI	CCWWGG	2 cut(s)	251, 1013
TaaI	ACNGT	2 cut(s)	167, 704
TaqI	TCGA	3 cut(s)	402, 958, 1053
TasI	AATT	9 cut(s)	228, 465, 516, 552, 634, 654, 908, 988, 1068
TatI	WGTACW	5 cut(s)	48, 384, 638, 708, 871
Tru1I	TTAA	3 cut(s)	44, 458, 696
Tru9I	TTAA	3 cut(s)	44, 458, 696
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	3 cut(s)	153, 205, 626
TseI	GCWGC	1 cut(s)	1064
Tsp45I	GTSAC	3 cut(s)	153, 205, 626
TspDTI	ATGAA	4 cut(s)	25, 185, 324, 1016
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	1 cut(s)	709
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	3 cut(s)	465, 908, 988
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	5 cut(s)	668, 680, 869, 963, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.