Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

47770610 .. 47771333

Gene Structure 724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAGAACTAAGACAAGGTTACGACATTGTTGGTGTCTACCAGGGTAATTTGATAGGCCGAGGTGTTTTAGAATTTTGCGACAATGGACCTCCAGTTAAAAACTTTGTCTCTTTAGGAGGACCTCATGTGTGTATTGCTTCTGTGCCTCTCTGCGGTTCTGGCATATTTTGCATTATTGCAAACAAGCTAATCAAAGGGGAGATCTATAGTGACTATATCCAAGATCACTTGGCTCTCAGTGGTTCTGTTAAATTGCCAAATGCTATGACTGATTATTTAGGAAGGTACAATGTTTTGGTACCTAGAGAAACCTCGTGGTTTGGATATTACTATGATGATGCCTTCAACTCAATTCTAGGAGGTCATCTTGGAATCTCCAAAAGTGATATGAAGAAGCTTATGGTGCCTCACTCAATAAGTTCAGCAACGCCAACAAATGGAAACAGTGAGGTGAACGGACTTCAACATGGAGTTGTGGGACGCAATGAGGAGCGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

167

Amino Acids

18.15

Weight (kDa)

5.91

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	4 - 95	5.9e-17	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	2 cut(s)	301, 406
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	2 cut(s)	290, 303
AfiI	CCNNNNNNNGG	2 cut(s)	155, 440
AgsI	TTSAA	2 cut(s)	349, 467
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	2 cut(s)	190, 400
AluI	AGCT	2 cut(s)	190, 400
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	89, 122
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	89, 122
BanI	GGYRCC	2 cut(s)	301, 406
BauI	CACGAG	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	306, 359
BfmI	CTRYAG	1 cut(s)	208
BglII	AGATCT	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	89, 122
BmgT120I	GGNCC	2 cut(s)	89, 122
BmiI	GGNNCC	2 cut(s)	303, 408
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	43, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 440
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	43, 61
BseLI	CCNNNNNNNGG	2 cut(s)	155, 440
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	2 cut(s)	301, 406
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	155, 440
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	204, 226
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	303, 408
BspT107I	GGYRCC	2 cut(s)	301, 406
BsrDI	GCAATG	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	43, 61
BssMI	GATC	2 cut(s)	204, 226
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	11, 239
BstFNI	CGCG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	207, 229
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	204, 226
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 171, 406
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	247, 454
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	89, 122
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	289, 302
CviAII	CATG	2 cut(s)	128, 470
CviJI	RGCY	4 cut(s)	60, 190, 236, 400
CviKI_1	RGCY	4 cut(s)	60, 190, 236, 400
CviQI	GTAC	2 cut(s)	289, 302
DdeI	CTNAG	2 cut(s)	11, 239
DpnI	GATC	2 cut(s)	206, 228
DpnII	GATC	2 cut(s)	204, 226
Eco47I	GGWCC	2 cut(s)	89, 122
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	131, 473
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	2 cut(s)	127, 469
FblI	GTMKAC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	306, 359
GlaI	GCGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	60
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	131, 473
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	1 cut(s)	375
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	2 cut(s)	40, 457
Hpy8I	GTNNAC	2 cut(s)	40, 457
HpyAV	CCTTC	2 cut(s)	279, 355
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	174, 182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 171, 406
HpyF3I	CTNAG	2 cut(s)	11, 239
Hsp92II	CATG	2 cut(s)	131, 473
HspAI	GCGC	1 cut(s)	496
KpnI	GGTACC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	204, 226
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	4 cut(s)	29, 56, 108, 147
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	306, 359
MaeIII	GTNAC	2 cut(s)	20, 212
MalI	GATC	2 cut(s)	206, 228
MboI	GATC	2 cut(s)	204, 226
MboII	GAAGA	2 cut(s)	17, 406
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	4 cut(s)	49, 74, 254, 354
MseI	TTAA	2 cut(s)	99, 252
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	162, 171, 406
NdeII	GATC	2 cut(s)	204, 226
NlaIII	CATG	2 cut(s)	131, 473
NlaIV	GGNNCC	2 cut(s)	303, 408
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	303, 408
PspPI	GGNCC	2 cut(s)	89, 122
PspPPI	RGGWCCY	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	2 cut(s)	290, 303
RsaNI	GTAC	2 cut(s)	289, 302
SaqAI	TTAA	2 cut(s)	99, 252
Sau3AI	GATC	2 cut(s)	204, 226
Sau96I	GGNCC	2 cut(s)	89, 122
ScrFI	CCNGG	1 cut(s)	44
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	89, 122
Sse9I	AATT	4 cut(s)	49, 74, 254, 354
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	306, 359
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	449
TasI	AATT	4 cut(s)	49, 74, 254, 354
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	99, 252
Tru9I	TTAA	2 cut(s)	99, 252
TscAI	CASTG	2 cut(s)	247, 454
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	247, 454
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	89, 122
XapI	RAATTY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	2 cut(s)	306, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.