Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004792.1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

13375 .. 14617

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004792.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggcgttcccattcttggaagctgttatcggtttgatgatattgatgtacaactttgaaacttatttggatttctgccaacatgctgctctgaaacttccaacacttcctaaaactttggaaggagtaatcagccaagaaaagtttgagaagtcgagagcctactgtcttgaaagaagatctcctctcgcagtctcgcccagtcggcccagatcgagagtctcgccgtcgccgattctgtttgctacggtgctaattgaatgtgaagaactcaccggtggcaggcatgtaccctctactaaaaaggaaggcactacgatccatgatccggtaactaagcatgctatttctactggtcatttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

8.51

Isoelectric Point (pI)

74.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	313, 320
AfaI	GTAC	2 cut(s)	50, 291
AfiI	CCNNNNNNNGG	3 cut(s)	16, 282, 328
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	59, 173, 260
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	199, 226
AlwI	GGATC	2 cut(s)	313, 320
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	86
AsiGI	ACCGGT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	199, 226
BglI	GCCNNNNNGGC	1 cut(s)	205
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BsaWI	WCCGGW	2 cut(s)	275, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 282, 328
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	201, 358
BseLI	CCNNNNNNNGG	3 cut(s)	16, 282, 328
BseNI	ACTGG	2 cut(s)	201, 358
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	276, 329
BslI	CCNNNNNNNGG	3 cut(s)	16, 282, 328
BsmAI	GTCTC	2 cut(s)	199, 226
BsnI	GGCC	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	179, 212, 318, 325
BspANI	GGCC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	313, 320
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	201, 358
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	4 cut(s)	179, 212, 318, 325
Bst4CI	ACNGT	2 cut(s)	167, 250
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	284, 342
BstDEI	CTNAG	1 cut(s)	336
BstKTI	GATC	4 cut(s)	182, 215, 321, 328
BstMAI	GTCTC	2 cut(s)	199, 226
BstMBI	GATC	4 cut(s)	179, 212, 318, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNSI	RCATGY	3 cut(s)	86, 290, 344
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	284, 342
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	49, 290
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	4 cut(s)	83, 287, 323, 341
CviJI	RGCY	4 cut(s)	23, 135, 161, 208
CviKI_1	RGCY	4 cut(s)	23, 135, 161, 208
CviQI	GTAC	2 cut(s)	49, 290
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	181, 214, 320, 327
DpnII	GATC	4 cut(s)	179, 212, 318, 325
FaeI	CATG	4 cut(s)	86, 290, 326, 344
FaiI	YATR	4 cut(s)	84, 288, 324, 342
FatI	CATG	4 cut(s)	82, 286, 322, 340
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	2 cut(s)	276, 329
Hin1II	CATG	4 cut(s)	86, 290, 326, 344
HinfI	GANTC	2 cut(s)	219, 235
HpaII	CCGG	2 cut(s)	276, 329
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	156, 170, 216
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	116, 302
HpyCH4III	ACNGT	2 cut(s)	167, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	86, 290, 326, 344
Kzo9I	GATC	4 cut(s)	179, 212, 318, 325
LpnPI	CCDG	6 cut(s)	214, 223, 268, 289, 339, 342
Lsp1109I	GCAGC	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	4 cut(s)	181, 214, 320, 327
MboI	GATC	4 cut(s)	179, 212, 318, 325
MboII	GAAGA	2 cut(s)	189, 278
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	195, 304
MspI	CCGG	2 cut(s)	276, 329
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	4 cut(s)	179, 212, 318, 325
NlaIII	CATG	4 cut(s)	86, 290, 326, 344
NspI	RCATGY	3 cut(s)	86, 290, 344
PaeI	GCATGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	235
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	2 cut(s)	50, 291
RsaNI	GTAC	2 cut(s)	49, 290
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	179, 212, 318, 325
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	228
SetI	ASST	1 cut(s)	25
SgrAI	CRCCGGYG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	167, 250
TaqI	TCGA	2 cut(s)	155, 215
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	86
XceI	RCATGY	3 cut(s)	86, 290, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.