Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

18902083 .. 18907611

Gene Structure 5529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAGTTCCCCTTCCTCGAAGCTGTGATTGGTTTCATGATATTAATGTACATCTTTGAGACTTATCTGGATACACGGCAACATTCTGCTCTCAAGCTTCCAACGCTTCCCAAAACTTTGGAGGGAGTAATCAGCCAAGAGAAGTTTGAGAAGTCACGAGCCTACAGTCTTGAAAAGAGTCATTTCCATTTTGTTCATGAGTTTGTGACAATACTAATGGATTCAGCAATTTTGTTCTTTCGGGTTTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTGTGGTTCTAGCTGGCCTAAATGCCGAAAATGAAATACTGCATACACTTGCATTTTTAGCTGGTGTAACGATGTGGTCACAGATCACTGATTTGCCATTTTCTCTCTACTCCACATTTGTGGTTGAGGCACGTCATGGTTTCAATAAGCAAACTATATGGTTATTCTTCAGAGACATGTTGAAAGGAATTTGCCTTATGGCTATTCTTGGCCCACCTATTGTGTCTGCAATTATTGTGATTGTGCAGAAAGGAGGTGCTTACTTGGCCATTTATCTTTGGGGATTCATGTTTGTGCTCTCTCTTGTTATGATGACGATCTACCCTATTCTAATAGCTCCACTCTTTAACAAGTTTACCCCTCTTCCAGAGGGTCCGCTCAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTACAAGGTCAAGCCATAGCAATGCCTATATGTACGGATTTTTTAAGAACAAGAGAATTGTCCTCTATGATACATTGATTCAGCAGTGCAAAAATAATGAGGAAATTGTAGCTGTTATTGCTCATGAGCTAGGCCATTGGAAGCTTAATCACACAATGTATTCATTTATTGCGGTGCAGATCCTTACACTTCTACAGTTTGGGGGATATACTCTAGTAAGAAATTCGAGCAGTCTGTTTCAAAGTTTTGGGTTTGACACCCAGCCAGTCATCATTGGACTCATCATATTTCAGCACACCATAATACCTGTCCAGCACCTGGTTAGCTTTGCTCTTAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTACGGAGCTTGGTTATGCCGCTTCACTTCGAGCTGGTCTTGTTCGGCTACAGGAAGAGAATTTGTCTGCTATGACTCAGCGATCCTTGGTACTCAGCGTATCACTATTCTCACCCCCGCTTGTTGAAAGGTTGGCTGCAATTGATGAAGAGGCCAAGAAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

424

Amino Acids

48.18

Weight (kDa)

7.79

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 210	1.6e-64	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	214 - 419	5.5e-45	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1045
AccBSI	CCGCTC	1 cut(s)	655
AciI	CCGC	4 cut(s)	653, 899, 1125, 1223
AclWI	GGATC	3 cut(s)	733, 901, 1182
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	4 cut(s)	465, 949, 1085, 1165
AcuI	CTGAAG	1 cut(s)	430
AfaI	GTAC	3 cut(s)	50, 761, 1197
AfiI	CCNNNNNNNGG	1 cut(s)	1045
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	7 cut(s)	173, 421, 460, 703, 968, 1085, 1232
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	1044
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	395
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	3 cut(s)	53, 267, 444
AlwI	GGATC	3 cut(s)	733, 901, 1182
AlwNI	CAGNNNCTG	1 cut(s)	1045
AoxI	GGCC	5 cut(s)	292, 487, 543, 859, 1257
ApeKI	GCWGC	1 cut(s)	1241
ApoI	RAATTY	4 cut(s)	465, 949, 1085, 1165
AseI	ATTAAT	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	488, 650
AsuHPI	GGTGA	1 cut(s)	1209
AvaII	GGWCC	1 cut(s)	650
BalI	TGGCCA	1 cut(s)	545
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	1228
BccI	CCATC	1 cut(s)	716
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	1046
BciVI	GTATCC	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	53, 267, 444
BfaI	CTAG	3 cut(s)	287, 857, 941
BfmI	CTRYAG	3 cut(s)	163, 920, 1154
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	1125, 1242
BlsI	GCNGC	2 cut(s)	1126, 1243
Bme1390I	CCNGG	1 cut(s)	1046
Bme18I	GGWCC	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	488, 650
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	1 cut(s)	1046
BmsI	GCATC	1 cut(s)	1087
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	77, 674
BsaBI	GATNNNNATC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	251, 1191
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	1045
Bse1I	ACTGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	1046
BseDI	CCNNGG	2 cut(s)	251, 1191
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	1045
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	3 cut(s)	670, 1196, 1213
BseNI	ACTGG	1 cut(s)	992
BseXI	GCAGC	1 cut(s)	1228
BseYI	CCCAGC	1 cut(s)	987
BsgI	GTGCAG	2 cut(s)	542, 923
BshFI	GGCC	5 cut(s)	294, 489, 545, 861, 1259
BsiHKAI	GWGCWC	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	1045
BsmAI	GTCTC	3 cut(s)	53, 267, 444
BsnI	GGCC	5 cut(s)	294, 489, 545, 861, 1259
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	360, 594, 725, 906, 1187
BspACI	CCGC	4 cut(s)	653, 899, 1125, 1223
BspANI	GGCC	5 cut(s)	294, 489, 545, 861, 1259
BspCNI	CTCAG	3 cut(s)	669, 1195, 1212
BspHI	TCATGA	3 cut(s)	36, 196, 850
BspLI	GGNNCC	1 cut(s)	651
BspPI	GGATC	3 cut(s)	733, 901, 1182
BsrBI	CCGCTC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	992
BssECI	CCNNGG	2 cut(s)	251, 1191
BssMI	GATC	5 cut(s)	360, 594, 725, 906, 1187
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	251, 1191
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	1046
Bst4CI	ACNGT	2 cut(s)	167, 924
Bst6I	CTCTTC	3 cut(s)	645, 1155, 1248
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	292, 678
BstDEI	CTNAG	3 cut(s)	656, 1182, 1199
BstKTI	GATC	5 cut(s)	363, 597, 728, 909, 1190
BstMAI	GTCTC	3 cut(s)	53, 267, 444
BstMBI	GATC	5 cut(s)	360, 594, 725, 906, 1187
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 335, 542, 845
BstNI	CCWGG	1 cut(s)	1046
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	1044
BstSFI	CTRYAG	3 cut(s)	163, 920, 1154
BstV1I	GCAGC	1 cut(s)	1228
BstX2I	RGATCY	2 cut(s)	725, 906
BstXI	CCANNNNNNTGG	2 cut(s)	118, 397
BstYI	RGATCY	2 cut(s)	725, 906
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	5 cut(s)	294, 489, 545, 861, 1259
BtrI	CACGTC	1 cut(s)	410
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	363, 818
Cac8I	GCNNGC	2 cut(s)	292, 678
CaiI	CAGNNNCTG	1 cut(s)	1045
CciI	TCATGA	3 cut(s)	36, 196, 850
Cfr13I	GGNCC	2 cut(s)	488, 650
CsiI	ACCWGGT	1 cut(s)	1044
Csp6I	GTAC	3 cut(s)	49, 760, 1196
CviAII	CATG	6 cut(s)	37, 197, 413, 454, 565, 851
CviQI	GTAC	3 cut(s)	49, 760, 1196
DdeI	CTNAG	3 cut(s)	656, 1182, 1199
DpnI	GATC	5 cut(s)	362, 596, 727, 908, 1189
DpnII	GATC	5 cut(s)	360, 594, 725, 906, 1187
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	645, 1155, 1248
EarI	CTCTTC	3 cut(s)	645, 1155, 1248
Eco130I	CCWWGG	2 cut(s)	251, 1191
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	1044
EcoT14I	CCWWGG	2 cut(s)	251, 1191
ErhI	CCWWGG	2 cut(s)	251, 1191
FaeI	CATG	6 cut(s)	40, 200, 416, 457, 568, 854
FatI	CATG	6 cut(s)	36, 196, 412, 453, 564, 850
FauI	CCCGC	1 cut(s)	1230
Fnu4HI	GCNGC	2 cut(s)	1125, 1242
Fsp4HI	GCNGC	2 cut(s)	1125, 1242
FspBI	CTAG	3 cut(s)	287, 857, 941
GluI	GCNGC	2 cut(s)	1125, 1242
GsaI	CCCAGC	1 cut(s)	991
HaeIII	GGCC	5 cut(s)	294, 489, 545, 861, 1259
Hin1II	CATG	6 cut(s)	40, 200, 416, 457, 568, 854
HindIII	AAGCTT	2 cut(s)	95, 869
HinfI	GANTC	6 cut(s)	178, 221, 561, 805, 1005, 1180
HphI	GGTGA	1 cut(s)	1209
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	8 cut(s)	37, 68, 156, 170, 197, 270, 644, 851
Hpy8I	GTNNAC	1 cut(s)	633
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	167, 924
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	7 cut(s)	319, 329, 506, 523, 816, 904, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 335, 542, 845
HpyF3I	CTNAG	3 cut(s)	656, 1182, 1199
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	6 cut(s)	40, 200, 416, 457, 568, 854
Kzo9I	GATC	5 cut(s)	360, 594, 725, 906, 1187
LmnI	GCTCC	2 cut(s)	619, 1111
Lsp1109I	GCAGC	1 cut(s)	1228
LweI	GCATC	1 cut(s)	1087
MabI	ACCWGGT	1 cut(s)	1044
MaeI	CTAG	3 cut(s)	287, 857, 941
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	4 cut(s)	153, 205, 343, 354
MalI	GATC	5 cut(s)	362, 596, 727, 908, 1189
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	5 cut(s)	360, 594, 725, 906, 1187
MboII	GAAGA	7 cut(s)	274, 436, 632, 675, 715, 1172, 1265
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	2 cut(s)	725, 906
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	545
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	3 cut(s)	187, 999, 1174
MmeI	TCCRAC	1 cut(s)	125
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	5 cut(s)	44, 624, 771, 873, 1062
MslI	CAYNNNNRTG	3 cut(s)	395, 569, 747
Msp20I	TGGCCA	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	1046
MunI	CAATTG	1 cut(s)	1245
MvaI	CCWGG	1 cut(s)	1046
MwoI	GCNNNNNNNGC	4 cut(s)	103, 335, 542, 845
NdeII	GATC	5 cut(s)	360, 594, 725, 906, 1187
NlaIII	CATG	6 cut(s)	40, 200, 416, 457, 568, 854
NlaIV	GGNNCC	1 cut(s)	651
NmeAIII	GCCGAG	1 cut(s)	1100
NmuCI	GTSAC	3 cut(s)	153, 205, 354
NspI	RCATGY	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	3 cut(s)	36, 196, 850
PciI	ACATGT	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	221, 561, 805
PflMI	CCANNNNNTGG	1 cut(s)	1045
PkrI	GCNGC	2 cut(s)	1126, 1243
PleI	GAGTC	3 cut(s)	186, 999, 1174
PpsI	GAGTC	3 cut(s)	186, 999, 1174
PscI	ACATGT	1 cut(s)	453
PshBI	ATTAAT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	1044
PspFI	CCCAGC	1 cut(s)	987
PspGI	CCWGG	1 cut(s)	1044
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	488, 650
PstNI	CAGNNNCTG	1 cut(s)	1045
PsuI	RGATCY	2 cut(s)	725, 906
RsaI	GTAC	3 cut(s)	50, 761, 1197
RsaNI	GTAC	3 cut(s)	49, 760, 1196
RseI	CAYNNNNRTG	3 cut(s)	395, 569, 747
SaqAI	TTAA	5 cut(s)	44, 624, 771, 873, 1062
SatI	GCNGC	2 cut(s)	1125, 1242
Sau3AI	GATC	5 cut(s)	360, 594, 725, 906, 1187
Sau96I	GGNCC	2 cut(s)	488, 650
SchI	GAGTC	3 cut(s)	187, 999, 1174
ScrFI	CCNGG	1 cut(s)	1046
SduI	GDGCHC	1 cut(s)	576
SexAI	ACCWGGT	1 cut(s)	1044
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	3 cut(s)	163, 920, 1154
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	3 cut(s)	395, 569, 747
SmlI	CTYRAG	2 cut(s)	92, 689
SmoI	CTYRAG	2 cut(s)	92, 689
SsiI	CCGC	4 cut(s)	653, 899, 1125, 1223
SspMI	CTAG	3 cut(s)	287, 857, 941
StyD4I	CCNGG	1 cut(s)	1044
StyI	CCWWGG	2 cut(s)	251, 1191
TaaI	ACNGT	2 cut(s)	167, 924
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	18, 953, 1135
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	3 cut(s)	221, 561, 805
Tru1I	TTAA	5 cut(s)	44, 624, 771, 873, 1062
Tru9I	TTAA	5 cut(s)	44, 624, 771, 873, 1062
TscAI	CASTG	2 cut(s)	370, 818
TseFI	GTSAC	3 cut(s)	153, 205, 354
TseI	GCWGC	1 cut(s)	1241
Tsp45I	GTSAC	3 cut(s)	153, 205, 354
TspDTI	ATGAA	6 cut(s)	25, 185, 324, 553, 879, 1266
TspGWI	ACGGA	2 cut(s)	777, 1124
TspRI	CASTG	2 cut(s)	370, 818
Van91I	CCANNNNNTGG	1 cut(s)	1045
VpaK11BI	GGWCC	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	4 cut(s)	465, 949, 1085, 1165
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	3 cut(s)	287, 857, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.