Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

18002905 .. 18005607

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGTTCCCATTCTTAGAAACAGTTATTGGTTTTAAGATATTAAAGTACATCCTAGAAACTTATTTGGATTTCCGGCAACACTCAGCTCTCAGGCTCCCAACCCTTCCTAAAGCTCTGGAAGGAGTAATCAGTCAAGAAAAGTTTGAGAAGTCACGAGCCTACCGTCTTGAGAAAAGCAATTTCCATTTTGTTCGTGTGTTTGTGACGATACTTGTGGACTCAGCAATATTGTTCTTTCGGGTTTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTGTAGTTTTAGCTGGCCTCAATGCTGAAAATGAAATACTGCATACCCTTGCATTTTTAGGAGGAATGATGATTTGGTCAAAGATAAAAAAGTTACCATTTTCTCTGTACTCCACATTTGTGATCGAGGCTCATCATGGTTTTAATAAGCGAACAATATGGTTATTCTTTAGAGACCTTTTTAAAGGAATATGTATCTCTGTTATCCTTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTACAGAAAGGAGGTGCTTACTTGGCCATATATCTTTGGGCGTTCATGCTTGTTTACTCTCTTGTGATGATGACCATCTACCCTATTCTAATAGCCCCACTCTTTAACAAGTTCACCCCTCTTCCGGAGGGTCAGCTCAGGGAAAAAATTGAGAAGCTCTGTTCTTCCCTTGATTTTCCATTGAAGAAGCTGTTTGTCATTGATGGATCAACAAGATCAACTCACAGCAATGCCTATATGTATGGTTTTTTTAACAACAAGAGAATTGTCCTCTATGATACACTGATTCAGCAGTGCAAAAATGATGAGGAAGTTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACACAGTGTACTTATTTATTTCTGGGCAGATCCGTATGCTTTTAAAATTAGGTGGATATGCTCTCCTGAAAAATTCCAGCAGTCTGTTTCAAAGTTTTGGGTTTGATACTCAACCAGTTATCATTGGTCTTATCATATTTCAGCATACCATTACACCCATCCAGCACCTAGTACGCTTTGCTAGTAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGATTTTGCTAAGAAACATGGTTATGCCTCTTCACTTCGAGCCAGTCTAGTGAGGCTGCAGGAAGAGAATTTGTCAGCTATGAACAACGATCCATGGTACTCGGCATATCACCATTCTCATCCCCCACTTGTTCAAAGGTTGGCTGCAATTGGTGATGTGGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

425

Amino Acids

48.6

Weight (kDa)

9.4

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 210	4.5e-61	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	213 - 416	5.8e-45	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	643
AclWI	GGATC	3 cut(s)	733, 901, 1181
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	3 cut(s)	949, 1085, 1165
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	6 cut(s)	50, 386, 522, 887, 1050, 1196
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	703, 968, 1085, 1232
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 334, 366
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	267, 444
AlwI	GGATC	3 cut(s)	733, 901, 1181
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	3 cut(s)	292, 543, 859
ApeKI	GCWGC	2 cut(s)	1153, 1241
ApoI	RAATTY	3 cut(s)	949, 1085, 1165
AsuHPI	GGTGA	3 cut(s)	625, 1199, 1262
BalI	TGGCCA	1 cut(s)	545
BauI	CACGAG	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	1140, 1228
BccI	CCATC	3 cut(s)	602, 716, 1043
BcoDI	GTCTC	2 cut(s)	267, 444
BfaI	CTAG	6 cut(s)	56, 845, 857, 1046, 1059, 1145
BfmI	CTRYAG	1 cut(s)	1154
BisI	GCNGC	2 cut(s)	1154, 1242
BlsI	GCNGC	2 cut(s)	1155, 1243
BmiI	GGNNCC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	251, 1190
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	992, 1140
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	251, 1190
BseGI	GGATG	3 cut(s)	51, 1035, 1216
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	4 cut(s)	99, 106, 237, 670
BseNI	ACTGG	2 cut(s)	992, 1140
BseXI	GCAGC	2 cut(s)	1140, 1228
BshFI	GGCC	3 cut(s)	294, 545, 861
BsiSI	CCGG	2 cut(s)	76, 644
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	267, 444
BsnI	GGCC	3 cut(s)	294, 545, 861
Bso31I	GGTCTC	1 cut(s)	444
Bsp13I	TCCGGA	1 cut(s)	643
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	399, 725, 734, 906, 1186
Bsp19I	CCATGG	1 cut(s)	1190
BspANI	GGCC	3 cut(s)	294, 545, 861
BspCNI	CTCAG	4 cut(s)	98, 105, 236, 669
BspEI	TCCGGA	1 cut(s)	643
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	1158
BspPI	GGATC	3 cut(s)	733, 901, 1181
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	992, 1140
BssECI	CCNNGG	2 cut(s)	251, 1190
BssMI	GATC	5 cut(s)	399, 725, 734, 906, 1186
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	251, 1190
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	25, 167, 883
Bst6I	CTCTTC	3 cut(s)	645, 1132, 1155
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	6 cut(s)	16, 85, 92, 223, 656, 1107
BstDSI	CCRYGG	1 cut(s)	1190
BstF5I	GGATG	3 cut(s)	51, 1035, 1216
BstKTI	GATC	5 cut(s)	402, 728, 737, 909, 1189
BstMAI	GTCTC	2 cut(s)	267, 444
BstMBI	GATC	5 cut(s)	399, 725, 734, 906, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 845
BstSFI	CTRYAG	1 cut(s)	1154
BstV1I	GCAGC	2 cut(s)	1140, 1228
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
BsuRI	GGCC	3 cut(s)	294, 545, 861
BtgI	CCRYGG	1 cut(s)	1190
BtsCI	GGATG	3 cut(s)	51, 1035, 1216
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	3 cut(s)	800, 818, 888
Cac8I	GCNNGC	1 cut(s)	292
CciI	TCATGA	1 cut(s)	850
Csp6I	GTAC	6 cut(s)	49, 385, 521, 886, 1049, 1195
CviAII	CATG	5 cut(s)	413, 565, 851, 1115, 1191
CviQI	GTAC	6 cut(s)	49, 385, 521, 886, 1049, 1195
DdeI	CTNAG	6 cut(s)	16, 85, 92, 223, 656, 1107
DpnI	GATC	5 cut(s)	401, 727, 736, 908, 1188
DpnII	GATC	5 cut(s)	399, 725, 734, 906, 1186
DraI	TTTAAA	2 cut(s)	460, 921
DraIII	CACNNNGTG	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	645, 1132, 1155
EarI	CTCTTC	3 cut(s)	645, 1132, 1155
Eco130I	CCWWGG	2 cut(s)	251, 1190
Eco31I	GGTCTC	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	251, 1190
ErhI	CCWWGG	2 cut(s)	251, 1190
FaeI	CATG	5 cut(s)	416, 568, 854, 1118, 1194
FatI	CATG	5 cut(s)	412, 564, 850, 1114, 1190
Fnu4HI	GCNGC	2 cut(s)	1154, 1242
FokI	GGATG	3 cut(s)	38, 1022, 1203
Fsp4HI	GCNGC	2 cut(s)	1154, 1242
FspBI	CTAG	6 cut(s)	56, 845, 857, 1046, 1059, 1145
GluI	GCNGC	2 cut(s)	1154, 1242
HaeIII	GGCC	3 cut(s)	294, 545, 861
HapII	CCGG	2 cut(s)	76, 644
Hin1II	CATG	5 cut(s)	416, 568, 854, 1118, 1194
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	2 cut(s)	221, 805
HpaII	CCGG	2 cut(s)	76, 644
HphI	GGTGA	3 cut(s)	625, 1199, 1262
Hpy166II	GTNNAC	5 cut(s)	220, 574, 633, 886, 1258
Hpy188III	TCNNGA	8 cut(s)	119, 137, 156, 170, 270, 644, 851, 943
Hpy8I	GTNNAC	5 cut(s)	220, 574, 633, 886, 1258
HpyAV	CCTTC	2 cut(s)	116, 116
HpyCH4III	ACNGT	3 cut(s)	25, 167, 883
HpyCH4V	TGCA	6 cut(s)	319, 329, 506, 816, 1156, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 845
HpyF3I	CTNAG	6 cut(s)	16, 85, 92, 223, 656, 1107
Hsp92II	CATG	5 cut(s)	416, 568, 854, 1118, 1194
Kpn2I	TCCGGA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	399, 725, 734, 906, 1186
LmnI	GCTCC	1 cut(s)	102
Lsp1109I	GCAGC	2 cut(s)	1140, 1228
MaeI	CTAG	6 cut(s)	56, 845, 857, 1046, 1059, 1145
MaeIII	GTNAC	4 cut(s)	153, 205, 369, 1061
MalI	GATC	5 cut(s)	401, 727, 736, 908, 1188
MboI	GATC	5 cut(s)	399, 725, 734, 906, 1186
MboII	GAAGA	6 cut(s)	274, 632, 675, 715, 1119, 1172
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	1 cut(s)	906
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	9 cut(s)	181, 516, 666, 783, 923, 949, 1085, 1165, 1245
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	215
Mox20I	TGGCCA	1 cut(s)	545
MroI	TCCGGA	1 cut(s)	643
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	8 cut(s)	36, 44, 420, 459, 624, 771, 873, 920
MslI	CAYNNNNRTG	3 cut(s)	395, 747, 1119
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	2 cut(s)	76, 644
MunI	CAATTG	1 cut(s)	1245
MwoI	GCNNNNNNNGC	2 cut(s)	542, 845
NcoI	CCATGG	1 cut(s)	1190
NdeII	GATC	5 cut(s)	399, 725, 734, 906, 1186
NlaIII	CATG	5 cut(s)	416, 568, 854, 1118, 1194
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	2 cut(s)	1100, 1178
NmuCI	GTSAC	2 cut(s)	153, 205
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	805
PkrI	GCNGC	2 cut(s)	1155, 1243
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	1158
PsuI	RGATCY	1 cut(s)	906
RsaI	GTAC	6 cut(s)	50, 386, 522, 887, 1050, 1196
RsaNI	GTAC	6 cut(s)	49, 385, 521, 886, 1049, 1195
RseI	CAYNNNNRTG	3 cut(s)	395, 747, 1119
SaqAI	TTAA	8 cut(s)	36, 44, 420, 459, 624, 771, 873, 920
SatI	GCNGC	2 cut(s)	1154, 1242
Sau3AI	GATC	5 cut(s)	399, 725, 734, 906, 1186
SchI	GAGTC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	1154
SmiMI	CAYNNNNRTG	3 cut(s)	395, 747, 1119
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	9 cut(s)	181, 516, 666, 783, 923, 949, 1085, 1165, 1245
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	6 cut(s)	56, 845, 857, 1046, 1059, 1145
StyI	CCWWGG	2 cut(s)	251, 1190
TaaI	ACNGT	3 cut(s)	25, 167, 883
TaqI	TCGA	2 cut(s)	402, 1135
TasI	AATT	9 cut(s)	181, 516, 666, 783, 923, 949, 1085, 1165, 1245
TatI	WGTACW	4 cut(s)	48, 384, 520, 885
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	8 cut(s)	36, 44, 420, 459, 624, 771, 873, 920
Tru9I	TTAA	8 cut(s)	36, 44, 420, 459, 624, 771, 873, 920
TscAI	CASTG	3 cut(s)	807, 818, 888
TseFI	GTSAC	2 cut(s)	153, 205
TseI	GCWGC	2 cut(s)	1153, 1241
Tsp45I	GTSAC	2 cut(s)	153, 205
TspDTI	ATGAA	3 cut(s)	324, 553, 1193
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	3 cut(s)	807, 818, 888
XapI	RAATTY	3 cut(s)	949, 1085, 1165
XspI	CTAG	6 cut(s)	56, 845, 857, 1046, 1059, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.