Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Forward (+)

39245284 .. 39247023

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTGTGGGTAACGGTGTTGTCTGGTAATGGTGTTGGTGGTGGTGGGTTTGGGTTTGGATGGCCTAGAGTGAATGGCTCCAATTCTAAGATCACTGATTTGCCATTTTCTCTCTACTCCACATTTGTGGTTGAGGCACGTCATGGTTTCAATAAGCAAATGATATGGTTATTCTTCAGAGATATGTTGAAAGGAATTTGCCTTATGGCTGTTCTTGGTCCATCAATTGTGTCTGCAATTATTGTGATTGTGCAGAAAGGAGGTGCTTACTTGGCCATTTATCTTTGGGGATTCATGTTTGTGCTCTCTCTTATTATGATGACCATCTACCCTATTCTAATAGCTCTACTCTTTAACAAGTTTACCCCTCTTCCAAAGGGTTCGCTCAGGGAGAAATTGAGAAGCTCCCCTCTTCCCTTAAGTTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

10.08

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	29 - 120	2.8e-35	CAAX prenyl protease N-terminal, five membrane helices

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	151, 190
AjiI	CACGTC	1 cut(s)	140
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	344, 405
AluI	AGCT	2 cut(s)	344, 405
Alw21I	GWGCWC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	62, 273
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	306
BccI	CCATC	3 cut(s)	54, 229, 332
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	323
BseGI	GGATG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	64, 275
BsiHKAI	GWGCWC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	64, 275
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	90
BspANI	GGCC	2 cut(s)	64, 275
BspCNI	CTCAG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	418
BssMI	GATC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	375, 417
BstAFI	CTTAAG	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	87, 386
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	64, 275
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	2 cut(s)	143, 295
CviJI	RGCY	6 cut(s)	64, 78, 209, 275, 344, 405
CviKI_1	RGCY	6 cut(s)	64, 78, 209, 275, 344, 405
DdeI	CTNAG	2 cut(s)	87, 386
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	375, 417
EarI	CTCTTC	2 cut(s)	375, 417
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	160
FaeI	CATG	2 cut(s)	146, 298
FaiI	YATR	6 cut(s)	144, 166, 185, 206, 296, 317
FatI	CATG	2 cut(s)	142, 294
FokI	GGATG	1 cut(s)	72
FspBI	CTAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	64, 275
Hin1II	CATG	2 cut(s)	146, 298
HinfI	GANTC	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	363
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	236, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	87, 386
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	146, 298
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	83, 410
LpnPI	CCDG	2 cut(s)	9, 373
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	3 cut(s)	166, 362, 404
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	5 cut(s)	82, 195, 225, 237, 395
MluNI	TGGCCA	1 cut(s)	275
MnlI	CCTC	4 cut(s)	127, 254, 378, 420
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	354, 419
MslI	CAYNNNNRTG	2 cut(s)	125, 299
Msp20I	TGGCCA	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	418
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	146, 298
NlaIV	GGNNCC	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	125, 299
SaqAI	TTAA	2 cut(s)	354, 419
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	4 cut(s)	142, 265, 346, 407
SgeI	CNNG	9 cut(s)	36, 78, 150, 155, 227, 283, 307, 370, 400
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	125, 299
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	5 cut(s)	82, 195, 225, 237, 395
SspMI	CTAG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	142
TasI	AATT	5 cut(s)	82, 195, 225, 237, 395
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	354, 419
Tru9I	TTAA	2 cut(s)	354, 419
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.