Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007965.1

Orthogroup ID

OG0001129

Physical Location & Seq

Genomic Coordinates Reverse (-)

20033 .. 21434

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007965.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgcttgtttactctcttgtgatgatgaccatctaccctattctaatagccccactctttaacaagttcacccctcttccggagggtcagctcagggaaaaaattgagaagctctgttcttcccttgattttccattgaagaagctgtttgtcattgatggatcaacaagatcaacttacagcaattgcaaaaatgatgaggaagttgtagctgttcaagctcatgagctaggccattggaagcttaatcacacaatccgtatgcttttaaaatttggtggatatgctctcctgagaaactccagcagtctgtttcaaagttttgggtttgatactcaaccacataccattacacctatccagcacctagtacgctttgctagtaaccttgtgagccgagcttttgaatttcaggctgatgattttgctaagaaacttggttatgcctcttcacttcgagccagtctagtgaggctgcaggaagagaatttgtcagctatgaacatcaatccatggtacttggcatatcaccgttctcatcccccacttgttcaaaggttggctgcaattggtgatgtggacaagaaagcagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

198

Amino Acids

22.53

Weight (kDa)

9.06

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01320 AT4G01320 AT4G01320
fragaria_vesca	FvH4_7g15081 FvH4_7g15081 FvH4_7g15081 FvH4_7g15083
malus_domestica	MD01G1069400.v1.1
prunus_persica	Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1 Prupe.2G175500_v2.0.a1
pyrus_communis	pycom01g09880
rosa_chinensis	RchiOBHm_Chr1g0357201 RchiOBHm_Chr1g0357211 RchiOBHm_Chr1g0357271 RchiOBHm_Chr3g0493601
rosa_laevigata	RLG00000018289 RLG00000028032 RLG00000028038 RLG00000028039 RLG00000028042 RLG00000028044
rosa_multiflora	Rmu_sc0004075.1_g000007 Rmu_sc0004792.1_g000002 Rmu_sc0005967.1_g000005 Rmu_sc0006798.1_g000014 Rmu_sc0007965.1_g000003 Rmu_sc0017004.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298940 Rroxscaffold_4G00298980 Rroxscaffold_4G00298990
rosa_rugosa	Rorug01G0213800 Rorug01G0254900 Rorug01G0255300 Rorug01G0255400 Rorug01G0255600 Rorug01G0255800 Rorug01G0255900 Rorug04G0302100 Rorug04G0302200 Rorug04G0302300 Rorug04G0302400
rosa_samantha	Rh1AG269100 Rh1AG269200 Rh1CG150800 Rh1CG252800 Rh1CG252900 Rh1CG253400 Rh1DG264200 Rh1DG264300 Rh3AG311700
rosa_wichuraiana	Rw1G023750 Rw1G023760 Rw1G023770 Rw1G023780 Rw1G023800 Rw1G023840 Rw1G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	79
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	3 cut(s)	272, 407, 487
AfaI	GTAC	2 cut(s)	372, 518
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	139, 218, 317, 407, 554
AluBI	AGCT	9 cut(s)	91, 112, 145, 212, 221, 229, 244, 401, 497
AluI	AGCT	9 cut(s)	91, 112, 145, 212, 221, 229, 244, 401, 497
AlwI	GGATC	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	475, 563
ApoI	RAATTY	3 cut(s)	272, 407, 487
AsuHPI	GGTGA	3 cut(s)	61, 521, 584
BbvI	GCAGC	2 cut(s)	462, 550
BccI	CCATC	2 cut(s)	38, 152
BfaI	CTAG	4 cut(s)	230, 368, 381, 467
BfmI	CTRYAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	476, 564
BlsI	GCNGC	2 cut(s)	477, 565
BpmI	CTGGAG	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	538
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	106, 284
BseNI	ACTGG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	462, 550
BshFI	GGCC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	161, 170
Bsp19I	CCATGG	1 cut(s)	512
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	105, 285
BspEI	TCCGGA	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	2 cut(s)	161, 170
BssT1I	CCWWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	3 cut(s)	81, 454, 477
BstDEI	CTNAG	3 cut(s)	92, 293, 429
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	2 cut(s)	164, 173
BstMBI	GATC	2 cut(s)	161, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	462, 550
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	538
CciI	TCATGA	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	371, 517
CviAII	CATG	2 cut(s)	224, 513
CviQI	GTAC	2 cut(s)	371, 517
DdeI	CTNAG	3 cut(s)	92, 293, 429
DpnI	GATC	2 cut(s)	163, 172
DpnII	GATC	2 cut(s)	161, 170
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	3 cut(s)	81, 454, 477
EarI	CTCTTC	3 cut(s)	81, 454, 477
Eco130I	CCWWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	2 cut(s)	227, 516
FaiI	YATR	8 cut(s)	225, 263, 285, 345, 444, 500, 514, 526
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FatI	CATG	2 cut(s)	223, 512
Fnu4HI	GCNGC	2 cut(s)	476, 564
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	2 cut(s)	476, 564
FspBI	CTAG	4 cut(s)	230, 368, 381, 467
GluI	GCNGC	2 cut(s)	476, 564
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	2 cut(s)	227, 516
HindIII	AAGCTT	1 cut(s)	242
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	3 cut(s)	61, 521, 584
Hpy166II	GTNNAC	3 cut(s)	10, 69, 580
Hpy188III	TCNNGA	3 cut(s)	80, 224, 292
Hpy8I	GTNNAC	3 cut(s)	10, 69, 580
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4V	TGCA	3 cut(s)	189, 478, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	92, 293, 429
Hsp92II	CATG	2 cut(s)	227, 516
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	161, 170
LpnPI	CCDG	8 cut(s)	79, 93, 305, 316, 374, 398, 464, 475
Lsp1109I	GCAGC	2 cut(s)	462, 550
MaeI	CTAG	4 cut(s)	230, 368, 381, 467
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	163, 172
MboI	GATC	2 cut(s)	161, 170
MboII	GAAGA	5 cut(s)	68, 111, 151, 441, 494
MfeI	CAATTG	2 cut(s)	184, 567
MluCI	AATT	6 cut(s)	102, 184, 272, 407, 487, 567
MnlI	CCTC	5 cut(s)	76, 84, 193, 457, 465
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	3 cut(s)	60, 246, 269
MspI	CCGG	1 cut(s)	80
MunI	CAATTG	2 cut(s)	184, 567
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	2 cut(s)	161, 170
NlaIII	CATG	2 cut(s)	227, 516
NmeAIII	GCCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	477, 565
PstI	CTGCAG	1 cut(s)	480
RsaI	GTAC	2 cut(s)	372, 518
RsaNI	GTAC	2 cut(s)	371, 517
SaqAI	TTAA	3 cut(s)	60, 246, 269
SatI	GCNGC	2 cut(s)	476, 564
Sau3AI	GATC	2 cut(s)	161, 170
SfcI	CTRYAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	102, 184, 272, 407, 487, 567
SspMI	CTAG	4 cut(s)	230, 368, 381, 467
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	533
TaqI	TCGA	1 cut(s)	457
TasI	AATT	6 cut(s)	102, 184, 272, 407, 487, 567
Tru1I	TTAA	3 cut(s)	60, 246, 269
Tru9I	TTAA	3 cut(s)	60, 246, 269
TseI	GCWGC	2 cut(s)	475, 563
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	1 cut(s)	248
XapI	RAATTY	3 cut(s)	272, 407, 487
XspI	CTAG	4 cut(s)	230, 368, 381, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.