DNA-directed RNA polymerase III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_3_Rpc31 | PF11705 | 25 - 191 | 2.1e-12 | DNA-directed RNA polymerase III subunit Rpc31 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 564 |
| AciI | CCGC | 1 cut(s) | 42 |
| AclWI | GGATC | 2 cut(s) | 92, 286 |
| AcsI | RAATTY | 1 cut(s) | 166 |
| AfaI | GTAC | 1 cut(s) | 236 |
| AgsI | TTSAA | 7 cut(s) | 134, 151, 223, 250, 425, 443, 590 |
| AluBI | AGCT | 5 cut(s) | 138, 371, 389, 421, 428 |
| AluI | AGCT | 5 cut(s) | 138, 371, 389, 421, 428 |
| AlwI | GGATC | 2 cut(s) | 92, 286 |
| Ama87I | CYCGRG | 1 cut(s) | 18 |
| AoxI | GGCC | 1 cut(s) | 356 |
| ApoI | RAATTY | 1 cut(s) | 166 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 248, 280 |
| AvaI | CYCGRG | 1 cut(s) | 18 |
| BanII | GRGCYC | 1 cut(s) | 19 |
| BccI | CCATC | 2 cut(s) | 182, 572 |
| BceAI | ACGGC | 1 cut(s) | 371 |
| BclI | TGATCA | 1 cut(s) | 526 |
| BisI | GCNGC | 1 cut(s) | 43 |
| BlsI | GCNGC | 1 cut(s) | 44 |
| BmeT110I | CYCGRG | 1 cut(s) | 18 |
| BmiI | GGNNCC | 1 cut(s) | 16 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 154, 186, 221, 253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 60 |
| BsaBI | GATNNNNATC | 2 cut(s) | 525, 531 |
| BsaJI | CCNNGG | 1 cut(s) | 19 |
| Bse8I | GATNNNNATC | 2 cut(s) | 525, 531 |
| BseDI | CCNNGG | 1 cut(s) | 19 |
| BseGI | GGATG | 2 cut(s) | 412, 580 |
| BseJI | GATNNNNATC | 2 cut(s) | 525, 531 |
| BseMII | CTCAG | 2 cut(s) | 51, 252 |
| BshFI | GGCC | 1 cut(s) | 358 |
| BsiHKCI | CYCGRG | 1 cut(s) | 18 |
| BsnI | GGCC | 1 cut(s) | 358 |
| BsoBI | CYCGRG | 1 cut(s) | 18 |
| Bsp1286I | GDGCHC | 1 cut(s) | 19 |
| Bsp143I | GATC | 3 cut(s) | 97, 278, 526 |
| BspACI | CCGC | 1 cut(s) | 42 |
| BspANI | GGCC | 1 cut(s) | 358 |
| BspCNI | CTCAG | 2 cut(s) | 52, 251 |
| BspLI | GGNNCC | 1 cut(s) | 16 |
| BspPI | GGATC | 2 cut(s) | 92, 286 |
| BssECI | CCNNGG | 1 cut(s) | 19 |
| BssMI | GATC | 3 cut(s) | 97, 278, 526 |
| Bst6I | CTCTTC | 4 cut(s) | 340, 359, 447, 585 |
| BstC8I | GCNNGC | 1 cut(s) | 56 |
| BstDEI | CTNAG | 6 cut(s) | 60, 181, 201, 238, 302, 429 |
| BstF5I | GGATG | 2 cut(s) | 412, 580 |
| BstKTI | GATC | 3 cut(s) | 100, 281, 529 |
| BstMBI | GATC | 3 cut(s) | 97, 278, 526 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 42, 51 |
| BstX2I | RGATCY | 2 cut(s) | 97, 278 |
| BstYI | RGATCY | 2 cut(s) | 97, 278 |
| BsuRI | GGCC | 1 cut(s) | 358 |
| BtgZI | GCGATG | 1 cut(s) | 201 |
| BtsCI | GGATG | 2 cut(s) | 412, 580 |
| Cac8I | GCNNGC | 1 cut(s) | 56 |
| Csp6I | GTAC | 1 cut(s) | 235 |
| CviQI | GTAC | 1 cut(s) | 235 |
| DdeI | CTNAG | 6 cut(s) | 60, 181, 201, 238, 302, 429 |
| DpnI | GATC | 3 cut(s) | 99, 280, 528 |
| DpnII | GATC | 3 cut(s) | 97, 278, 526 |
| Eam1104I | CTCTTC | 4 cut(s) | 340, 359, 447, 585 |
| EarI | CTCTTC | 4 cut(s) | 340, 359, 447, 585 |
| Eco24I | GRGCYC | 1 cut(s) | 19 |
| Eco88I | CYCGRG | 1 cut(s) | 18 |
| EcoRI | GAATTC | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 1 cut(s) | 19 |
| FaiI | YATR | 4 cut(s) | 39, 51, 525, 564 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 315, 347 |
| FbaI | TGATCA | 1 cut(s) | 526 |
| Fnu4HI | GCNGC | 1 cut(s) | 43 |
| FokI | GGATG | 2 cut(s) | 419, 587 |
| FriOI | GRGCYC | 1 cut(s) | 19 |
| Fsp4HI | GCNGC | 1 cut(s) | 43 |
| GluI | GCNGC | 1 cut(s) | 43 |
| HaeIII | GGCC | 1 cut(s) | 358 |
| HindIII | AAGCTT | 1 cut(s) | 419 |
| HinfI | GANTC | 6 cut(s) | 119, 242, 379, 491, 506, 532 |
| Hpy188I | TCNGA | 4 cut(s) | 241, 496, 511, 531 |
| Hpy188III | TCNNGA | 2 cut(s) | 383, 536 |
| Hpy99I | CGWCG | 1 cut(s) | 560 |
| HpyAV | CCTTC | 3 cut(s) | 437, 458, 491 |
| HpyCH4IV | ACGT | 1 cut(s) | 89 |
| HpyCH4V | TGCA | 1 cut(s) | 397 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 42, 51 |
| HpyF3I | CTNAG | 6 cut(s) | 60, 181, 201, 238, 302, 429 |
| HpySE526I | ACGT | 1 cut(s) | 89 |
| Ksp22I | TGATCA | 1 cut(s) | 526 |
| Kzo9I | GATC | 3 cut(s) | 97, 278, 526 |
| LmnI | GCTCC | 1 cut(s) | 14 |
| LpnPI | CCDG | 5 cut(s) | 72, 93, 108, 321, 372 |
| MaeII | ACGT | 1 cut(s) | 89 |
| MaeIII | GTNAC | 1 cut(s) | 90 |
| MalI | GATC | 3 cut(s) | 99, 280, 528 |
| MboI | GATC | 3 cut(s) | 97, 278, 526 |
| MboII | GAAGA | 9 cut(s) | 268, 357, 376, 464, 473, 482, 491, 515, 602 |
| MflI | RGATCY | 2 cut(s) | 97, 278 |
| MhlI | GDGCHC | 1 cut(s) | 19 |
| MluCI | AATT | 4 cut(s) | 84, 125, 166, 401 |
| MlyI | GAGTC | 2 cut(s) | 113, 388 |
| MnlI | CCTC | 5 cut(s) | 14, 156, 225, 565, 586 |
| MseI | TTAA | 2 cut(s) | 435, 601 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 42, 51 |
| NdeII | GATC | 3 cut(s) | 97, 278, 526 |
| NlaIV | GGNNCC | 1 cut(s) | 16 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 251 |
| PfeI | GAWTC | 4 cut(s) | 242, 491, 506, 532 |
| PkrI | GCNGC | 1 cut(s) | 44 |
| PleI | GAGTC | 2 cut(s) | 113, 387 |
| PpsI | GAGTC | 2 cut(s) | 113, 387 |
| PsiI | TTATAA | 1 cut(s) | 564 |
| PspN4I | GGNNCC | 1 cut(s) | 16 |
| PsuI | RGATCY | 2 cut(s) | 97, 278 |
| RsaI | GTAC | 1 cut(s) | 236 |
| RsaNI | GTAC | 1 cut(s) | 235 |
| SaqAI | TTAA | 2 cut(s) | 435, 601 |
| SatI | GCNGC | 1 cut(s) | 43 |
| Sau3AI | GATC | 3 cut(s) | 97, 278, 526 |
| SchI | GAGTC | 2 cut(s) | 113, 388 |
| SduI | GDGCHC | 1 cut(s) | 19 |
| Sse9I | AATT | 4 cut(s) | 84, 125, 166, 401 |
| SsiI | CCGC | 1 cut(s) | 42 |
| TaiI | ACGT | 1 cut(s) | 92 |
| TaqI | TCGA | 1 cut(s) | 343 |
| TasI | AATT | 4 cut(s) | 84, 125, 166, 401 |
| TauI | GCSGC | 1 cut(s) | 45 |
| TfiI | GAWTC | 4 cut(s) | 242, 491, 506, 532 |
| Tru1I | TTAA | 2 cut(s) | 435, 601 |
| Tru9I | TTAA | 2 cut(s) | 435, 601 |
| TspDTI | ATGAA | 2 cut(s) | 275, 492 |
| TspGWI | ACGGA | 1 cut(s) | 531 |
| XapI | RAATTY | 1 cut(s) | 166 |