Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

40841903 .. 40843391

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG242000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTATTCGTTCTGTGCTCGGAAAGCTGCCCAAGACTTGTAAATATGAAAGACTAGTGATTGGGACATATGAAGGTATCAAACATAATAAACCCCCTACTGCTCCTCGTCCTTTTCCTTTTCGGCTCCATGAAAATCATGTTCCTATGCCCTTAACAGACCCGATTAAGACAAAGGGATTGATTTATCATATGGAGTTGGGAGGACTGGCGCCTGCACGTTTTGCCGTGCAAGAGTTCAACAAGCAAAAGAAATCTCAACTGCAGTTTGTGAGAGTGATCAAGTTTTTGAGAGTAGATAGAAGCTGTATGAAGCTGCAGATTTTGGATTTAAATTCTTGTCATTGTTTCTATGGTCTAATATTGGAGGCAATTGATGCTGCCGGTGTGGTCAAATTCTACCAAGCATGTGTGAGGCTGCATGACTTAACTGAGGGCTTGTGGTTGGAAGACTTCTATGTTTTCTCCGATGATGGAGACAAGCGTATGCGACTATATCATCACCTAGTTCATTTGCTTGAAACAGACAACTTTTATGCTGGATTACACGACAAGCATGTCATACCTGGCAAAGGTCAAAGTGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

196

Amino Acids

22.5

Weight (kDa)

9.16

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	1 cut(s)	585
AcsI	RAATTY	2 cut(s)	334, 395
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	241, 521
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	3 cut(s)	28, 306, 316
AluI	AGCT	3 cut(s)	28, 306, 316
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	471
ApeKI	GCWGC	4 cut(s)	28, 316, 380, 418
ApoI	RAATTY	2 cut(s)	334, 395
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	15, 303, 367, 405
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	56, 506
BfmI	CTRYAG	2 cut(s)	263, 317
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	5 cut(s)	29, 317, 381, 419, 585
BlsI	GCNGC	5 cut(s)	30, 318, 382, 420, 586
Bme1390I	CCNGG	1 cut(s)	567
BmiI	GGNNCC	2 cut(s)	128, 213
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	15, 303, 367, 405
BsgI	GTGCAG	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	585
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	128, 213
BspMAI	CTGCAG	2 cut(s)	267, 321
BspT107I	GGYRCC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	383
BssMI	GATC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	212
BstAPI	GCANNNNNTGC	2 cut(s)	224, 377
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 224, 377
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	2 cut(s)	411, 560
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	2 cut(s)	263, 317
BstV1I	GCAGC	4 cut(s)	15, 303, 367, 405
BstV2I	GAAGAC	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	383
CviAII	CATG	5 cut(s)	131, 140, 408, 422, 557
CviJI	RGCY	7 cut(s)	5, 28, 127, 306, 316, 418, 438
CviKI_1	RGCY	7 cut(s)	5, 28, 127, 306, 316, 418, 438
DdeI	CTNAG	1 cut(s)	432
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	565
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
FaeI	CATG	5 cut(s)	134, 143, 411, 425, 560
FalI	AAGNNNNNCTT	1 cut(s)	571
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	5 cut(s)	130, 139, 407, 421, 556
FauNDI	CATATG	2 cut(s)	70, 192
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	5 cut(s)	29, 317, 381, 419, 585
Fsp4HI	GCNGC	5 cut(s)	29, 317, 381, 419, 585
FspBI	CTAG	2 cut(s)	56, 506
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	5 cut(s)	29, 317, 381, 419, 585
HaeII	RGCGCY	1 cut(s)	215
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	134, 143, 411, 425, 560
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	494
Hpy188I	TCNGA	2 cut(s)	23, 469
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	5 cut(s)	218, 232, 265, 319, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 224, 377
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	134, 143, 411, 425, 560
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	109, 132
LpnPI	CCDG	6 cut(s)	194, 228, 397, 525, 552, 579
Lsp1109I	GCAGC	4 cut(s)	15, 303, 367, 405
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	56, 506
MaeII	ACGT	1 cut(s)	220
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	461
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	334, 372, 395
Mly113I	GGCGCC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	5 cut(s)	117, 197, 361, 408, 427
MseI	TTAA	4 cut(s)	155, 168, 332, 428
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	567
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	3 cut(s)	25, 224, 377
NarI	GGCGCC	1 cut(s)	212
NdeI	CATATG	2 cut(s)	70, 192
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	5 cut(s)	134, 143, 411, 425, 560
NlaIV	GGNNCC	2 cut(s)	128, 213
NspI	RCATGY	2 cut(s)	411, 560
PkrI	GCNGC	5 cut(s)	30, 318, 382, 420, 586
PluTI	GGCGCC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	128, 213
PstI	CTGCAG	2 cut(s)	267, 321
SaqAI	TTAA	4 cut(s)	155, 168, 332, 428
SatI	GCNGC	5 cut(s)	29, 317, 381, 419, 585
Sau3AI	GATC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	30, 79, 223, 308, 318, 507, 568, 577
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	2 cut(s)	263, 317
SfoI	GGCGCC	1 cut(s)	213
SmiI	ATTTAAAT	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	3 cut(s)	334, 372, 395
SsiI	CCGC	1 cut(s)	585
SspDI	GGCGCC	1 cut(s)	211
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	2 cut(s)	56, 506
StyD4I	CCNGG	1 cut(s)	565
SwaI	ATTTAAAT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	223
TasI	AATT	3 cut(s)	334, 372, 395
TauI	GCSGC	1 cut(s)	587
Tru1I	TTAA	4 cut(s)	155, 168, 332, 428
Tru9I	TTAA	4 cut(s)	155, 168, 332, 428
TseI	GCWGC	4 cut(s)	28, 316, 380, 418
TspDTI	ATGAA	5 cut(s)	63, 87, 147, 326, 500
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	2 cut(s)	334, 395
XceI	RCATGY	2 cut(s)	411, 560
XspI	CTAG	2 cut(s)	56, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.