Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

4844469 .. 4846517

Gene Structure 2049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG046000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTATTCGTTCTGTGCTCGGAAAGCTGCCCAAGATTTGTGAATATGAAAGACTTATGATTGGGACATATGAAGGTATCAAACATAATAAAGCCCTTACTGCTCTTTGTCCTTTTCGGGTCCATGAAAATCATGTTCCCGTGCCCGTGAAAGACCAGATTAAGACACAGGGATTGATTTATCACATGGAGTTGGGAGGACTGGGGCCTGCACGTTTTGCCGTCGAAGAGTTCAACAAGCAAAAGAAATCCCAACTGCAGTTTGTGAGAGTGGTCAAGTTTTTGAGAGTGGATAGAAGCTGCAGAATGAACCTGCAGCGTTGGGATTTAAATTATTGTCATTGTTTGTATGCTCTAATATTGGAGGCAATTGATGCTGCCGGCGTGGTCAAATTCTACCAAGCATGTGTTAGGCTTCATGACTTAACTGAGGGCTTGTGGTTGGAAGAATTCTTGGTTTTCTCTGATAATGGAGACGAGCGTATGCGACTATATCATCACCTAGGTAACTATACATCCATGGCGTATAAGGCATGTTGCTTTGATTATGTATATTATAAGAGACTAAATGTCATGAGTCCCTGTGATGGGGGTCATGAGTCCCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

203

Amino Acids

23.56

Weight (kDa)

8.52

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	392, 449
AfiI	CCNNNNNNNGG	2 cut(s)	587, 588
AgsI	TTSAA	1 cut(s)	235
AhdI	GACNNNNNGTC	1 cut(s)	569
AluBI	AGCT	2 cut(s)	28, 300
AluI	AGCT	2 cut(s)	28, 300
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	468, 556
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	4 cut(s)	28, 300, 316, 377
ApoI	RAATTY	2 cut(s)	392, 449
AspA2I	CCTAGG	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	121, 206
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	121
AvrII	CCTAGG	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	15, 287, 328, 364
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	468, 556
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	3 cut(s)	257, 301, 314
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	4 cut(s)	29, 301, 317, 378
BlnI	CCTAGG	1 cut(s)	502
BlsI	GCNGC	4 cut(s)	30, 302, 318, 379
Bme18I	GGWCC	1 cut(s)	121
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	121, 206
BmiI	GGNNCC	2 cut(s)	122, 207
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	502, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	587, 588
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	502, 519
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	587, 588
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	15, 287, 328, 364
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	3 cut(s)	79, 564, 586
BslI	CCNNNNNNNGG	2 cut(s)	587, 588
BsmAI	GTCTC	2 cut(s)	468, 556
BsmBI	CGTCTC	1 cut(s)	468
BsmFI	GGGAC	3 cut(s)	79, 564, 586
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	21, 147
Bsp19I	CCATGG	1 cut(s)	519
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	3 cut(s)	418, 573, 595
BspLI	GGNNCC	2 cut(s)	122, 207
BspMAI	CTGCAG	3 cut(s)	261, 305, 318
BspMI	ACCTGC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	502, 519
BssT1I	CCWWGG	2 cut(s)	502, 519
Bst6I	CTCTTC	1 cut(s)	222
BstAPI	GCANNNNNTGC	2 cut(s)	218, 374
BstC8I	GCNNGC	2 cut(s)	210, 382
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	515
BstMAI	GTCTC	2 cut(s)	468, 556
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 101, 218, 374, 530
BstNSI	RCATGY	2 cut(s)	408, 537
BstSFI	CTRYAG	3 cut(s)	257, 301, 314
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	4 cut(s)	15, 287, 328, 364
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	210, 382
CciI	TCATGA	3 cut(s)	418, 573, 595
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	121, 206
CviAII	CATG	9 cut(s)	125, 134, 187, 405, 419, 520, 534, 574, 596
CviJI	RGCY	7 cut(s)	5, 28, 95, 208, 300, 415, 435
CviKI_1	RGCY	7 cut(s)	5, 28, 95, 208, 300, 415, 435
DdeI	CTNAG	1 cut(s)	429
DraI	TTTAAA	1 cut(s)	330
DriI	GACNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	502, 519
Eco47I	GGWCC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	502, 519
ErhI	CCWWGG	2 cut(s)	502, 519
Esp3I	CGTCTC	1 cut(s)	468
FaeI	CATG	9 cut(s)	128, 137, 190, 408, 422, 523, 537, 577, 599
FaqI	GGGAC	3 cut(s)	79, 564, 586
FatI	CATG	9 cut(s)	124, 133, 186, 404, 418, 519, 533, 573, 595
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	29, 301, 317, 378
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	4 cut(s)	29, 301, 317, 378
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	4 cut(s)	29, 301, 317, 378
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	9 cut(s)	128, 137, 190, 408, 422, 523, 537, 577, 599
HinfI	GANTC	2 cut(s)	577, 599
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	23, 466
Hpy188III	TCNNGA	3 cut(s)	419, 574, 596
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	212, 259, 303, 316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 101, 218, 374, 530
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	9 cut(s)	128, 137, 190, 408, 422, 523, 537, 577, 599
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
LpnPI	CCDG	7 cut(s)	155, 170, 188, 222, 326, 394, 595
Lsp1109I	GCAGC	4 cut(s)	15, 287, 328, 364
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	506
MboII	GAAGA	2 cut(s)	239, 458
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	21, 147
MluCI	AATT	4 cut(s)	331, 369, 392, 449
MlyI	GAGTC	2 cut(s)	586, 608
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	3 cut(s)	191, 358, 424
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	3 cut(s)	162, 329, 425
MspI	CCGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	5 cut(s)	25, 101, 218, 374, 530
NaeI	GCCGGC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	519
NdeI	CATATG	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	9 cut(s)	128, 137, 190, 408, 422, 523, 537, 577, 599
NlaIV	GGNNCC	2 cut(s)	122, 207
NspI	RCATGY	2 cut(s)	408, 537
PagI	TCATGA	3 cut(s)	418, 573, 595
PdiI	GCCGGC	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	30, 302, 318, 379
PleI	GAGTC	2 cut(s)	585, 607
PpsI	GAGTC	2 cut(s)	585, 607
PsiI	TTATAA	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	122, 207
PspPI	GGNCC	2 cut(s)	121, 206
PstI	CTGCAG	3 cut(s)	261, 305, 318
SaqAI	TTAA	3 cut(s)	162, 329, 425
SatI	GCNGC	4 cut(s)	29, 301, 317, 378
Sau96I	GGNCC	2 cut(s)	121, 206
SchI	GAGTC	2 cut(s)	586, 608
SduI	GDGCHC	2 cut(s)	21, 147
SetI	ASST	7 cut(s)	30, 79, 217, 302, 315, 504, 508
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	3 cut(s)	257, 301, 314
SinI	GGWCC	1 cut(s)	121
SmiI	ATTTAAAT	1 cut(s)	330
Sse9I	AATT	4 cut(s)	331, 369, 392, 449
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	1 cut(s)	503
StyI	CCWWGG	2 cut(s)	502, 519
SwaI	ATTTAAAT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	225
TasI	AATT	4 cut(s)	331, 369, 392, 449
Tru1I	TTAA	3 cut(s)	162, 329, 425
Tru9I	TTAA	3 cut(s)	162, 329, 425
TseI	GCWGC	4 cut(s)	28, 300, 316, 377
TspDTI	ATGAA	5 cut(s)	63, 87, 141, 323, 407
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	2 cut(s)	392, 449
XceI	RCATGY	2 cut(s)	408, 537
XmaJI	CCTAGG	1 cut(s)	502
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.