Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

35931703 .. 35932746

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTAGTAGTAAATGTATTCACAAAAATAGAAGACTAGTTTTGATGCTTGGCCATTGCGAGGCCGAAGCGCACAAGAAGAATCACAACCACAATCACAGAAACAATAAGAAGAAGGCGCCAGTAGTGCGTACTGCTGCTAATGCTTATCTGTTTGAATTCGGGTGTATTGATGAAAATGGTTTTCGAATTCCGATGACTGTTAATAGGGGAATTGATTATCATATGGATTTAGGGGGACTGGGACCTGCCTGTTTCGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAATTTGTGAGACTGCAGAGAACTTGGATGAAGCCGCTGTTTCATTGCGAATGTATATATGAACTAATCTTGGAGGCGGTTGATGCTGCCGGTGTGGTAAATATTTACCTAGCTTATGTCCAGTTAAATGATATGAAGGAGAGGGGAATGTGGCTGGAACAGTTCCATATTTTCCGTCATACCGGTTTCCCTTCAAAACTCTATCATTATCTGGGTAACGACTGTATTCGTATATTTATTTATTCAATCAATGTTATGCATATTGCTTGGTTGCATTATATTTATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

196

Amino Acids

22.97

Weight (kDa)

9.16

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	118
AciI	CCGC	2 cut(s)	332, 374
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	158, 189
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	158, 274, 492, 543
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	2 cut(s)	52, 63
ApeKI	GCWGC	2 cut(s)	137, 383
ApoI	RAATTY	2 cut(s)	158, 189
AsiGI	ACCGGT	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	73, 121
AspS9I	GGNCC	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	124, 370
BcoDI	GTCTC	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	6, 38, 407
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	138, 332, 384
BlsI	GCNGC	3 cut(s)	139, 333, 385
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	120, 246
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	36, 370
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	2 cut(s)	386, 479
Bse1I	ACTGG	3 cut(s)	122, 246, 418
Bse3DI	GCAATG	2 cut(s)	55, 340
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	55, 340
BseNI	ACTGG	3 cut(s)	122, 246, 418
BseXI	GCAGC	2 cut(s)	124, 370
BshFI	GGCC	2 cut(s)	54, 65
BshNI	GGYRCC	1 cut(s)	118
BshTI	ACCGGT	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	387, 480
BslFI	GGGAC	2 cut(s)	252, 258
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	252, 258
BsnI	GGCC	2 cut(s)	54, 65
Bsp119I	TTCGAA	1 cut(s)	187
BspACI	CCGC	2 cut(s)	332, 374
BspANI	GGCC	2 cut(s)	54, 65
BspLI	GGNNCC	2 cut(s)	120, 246
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	55, 340
BsrFI	RCCGGY	2 cut(s)	386, 479
BsrI	ACTGG	3 cut(s)	122, 246, 418
BssAI	RCCGGY	2 cut(s)	386, 479
BssNI	GRCGYC	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	202, 459, 521
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	73, 121
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 143, 257, 380
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	124, 370
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	54, 65
BtsCI	GGATG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	256
CfoI	GCGC	2 cut(s)	73, 121
Cfr10I	RCCGGY	2 cut(s)	386, 479
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	132
CspAI	ACCGGT	1 cut(s)	479
CviJI	RGCY	6 cut(s)	5, 54, 65, 331, 410, 451
CviKI_1	RGCY	6 cut(s)	5, 54, 65, 331, 410, 451
CviQI	GTAC	1 cut(s)	132
DinI	GGCGCC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	2 cut(s)	158, 189
EcoT22I	ATGCAT	1 cut(s)	558
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
FaqI	GGGAC	2 cut(s)	252, 258
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	138, 332, 384
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	138, 332, 384
FspBI	CTAG	3 cut(s)	6, 38, 407
GlaI	GCGC	2 cut(s)	72, 120
GluI	GCNGC	3 cut(s)	138, 332, 384
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	54, 65
HapII	CCGG	2 cut(s)	387, 480
HhaI	GCGC	2 cut(s)	73, 121
Hin1I	GRCGYC	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	71, 119
HinP1I	GCGC	2 cut(s)	71, 119
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	2 cut(s)	387, 480
Hpy188I	TCNGA	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	109, 427, 498
HpyCH4III	ACNGT	3 cut(s)	202, 459, 521
HpyCH4V	TGCA	4 cut(s)	298, 313, 556, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 143, 257, 380
Hsp92I	GRCGYC	1 cut(s)	119
HspAI	GCGC	2 cut(s)	71, 119
KasI	GGCGCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	135, 227, 261, 265, 400, 431, 437, 493, 494
Lsp1109I	GCAGC	2 cut(s)	124, 370
LweI	GCATC	2 cut(s)	36, 370
MaeI	CTAG	3 cut(s)	6, 38, 407
MaeIII	GTNAC	1 cut(s)	512
MboII	GAAGA	4 cut(s)	45, 91, 124, 278
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	4 cut(s)	158, 189, 213, 299
MluNI	TGGCCA	1 cut(s)	54
Mly113I	GGCGCC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	55, 364, 432
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	3 cut(s)	204, 422, 586
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	387, 480
MwoI	GCNNNNNNNGC	4 cut(s)	127, 143, 257, 380
NarI	GGCGCC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	225
NlaIV	GGNNCC	2 cut(s)	120, 246
NsiI	ATGCAT	1 cut(s)	558
NspV	TTCGAA	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	82
PinAI	ACCGGT	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	139, 333, 385
PluTI	GGCGCC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	120, 246
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	315
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	204, 422, 586
SatI	GCNGC	3 cut(s)	138, 332, 384
Sau96I	GGNCC	1 cut(s)	245
SetI	ASST	3 cut(s)	250, 408, 412
SfaNI	GCATC	2 cut(s)	36, 370
SfcI	CTRYAG	1 cut(s)	311
SfoI	GGCGCC	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	1 cut(s)	245
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	4 cut(s)	158, 189, 213, 299
SsiI	CCGC	2 cut(s)	332, 374
SspDI	GGCGCC	1 cut(s)	118
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	3 cut(s)	6, 38, 407
TaaI	ACNGT	3 cut(s)	202, 459, 521
TaqI	TCGA	1 cut(s)	187
TasI	AATT	4 cut(s)	158, 189, 213, 299
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	3 cut(s)	204, 422, 586
Tru9I	TTAA	3 cut(s)	204, 422, 586
TseI	GCWGC	2 cut(s)	137, 383
TspDTI	ATGAA	5 cut(s)	189, 329, 341, 372, 446
TspGWI	ACGGA	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	158, 189
XspI	CTAG	3 cut(s)	6, 38, 407
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.