FvH4_5g23500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000459
Physical Location & Seq
Reverse (-)
14830894 .. 14833579
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23500.t1

Sequence Viewer

Length: 267 bp
ATGCTTGGCAATTGTGAGGCCGAAGTGCACAAGATGAATCAGAATCACAATCACAGTAACAATAAGAAGGAGCCTGTAAAGCGTACTGCTGCTAATTCTTATCTGTTTGAATACGGGTGTATTGATGAAAATGGTTTCCGAATTCTGATGACTGTTAATAGGGGAATTGATTATCATATGGATTTAGGGGGACTAGGACCGGCCTGTTTCGCTGTCGAAGAGTTCAACAAGCGAAAGGGACTTGAAGGGCTGTTTGGATTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.91

Weight (kDa)

6.4

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 85
AgsI TTSAA 3 cut(s) 110, 226, 245
AjuI GAANNNNNNNTTGG 1 cut(s) 237
Alw21I GWGCWC 1 cut(s) 30
Alw44I GTGCAC 1 cut(s) 26
AoxI GGCC 2 cut(s) 18, 201
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 76
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 2 cut(s) 20, 203
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 2 cut(s) 204, 252
BsmFI GGGAC 2 cut(s) 204, 252
BsnI GGCC 2 cut(s) 20, 203
Bsp1286I GDGCHC 1 cut(s) 30
BspANI GGCC 2 cut(s) 20, 203
BspLI GGNNCC 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 56, 154
Bst6I CTCTTC 1 cut(s) 213
BstMWI GCNNNNNNNGC 2 cut(s) 79, 209
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 2 cut(s) 20, 203
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 4 cut(s) 20, 73, 203, 250
CviKI_1 RGCY 4 cut(s) 20, 73, 203, 250
CviQI GTAC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 141
FaiI YATR 3 cut(s) 177, 179, 265
FaqI GGGAC 2 cut(s) 204, 252
FauNDI CATATG 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 20, 203
HapII CCGG 1 cut(s) 200
HinfI GANTC 2 cut(s) 37, 43
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 42, 140, 147
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 61, 239
HpyCH4III ACNGT 2 cut(s) 56, 154
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 209
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 87, 213, 217
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 1 cut(s) 230
MfeI CAATTG 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 10, 94, 141, 165
MnlI CCTC 1 cut(s) 10
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 79, 209
NdeI CATATG 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 37, 43
PkrI GCNGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 30
SgeI CNNG 9 cut(s) 17, 43, 86, 127, 206, 212, 216, 241, 254
SinI GGWCC 1 cut(s) 197
Sse9I AATT 4 cut(s) 10, 94, 141, 165
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 56, 154
TaqI TCGA 1 cut(s) 216
TasI AATT 4 cut(s) 10, 94, 141, 165
TfiI GAWTC 2 cut(s) 37, 43
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 50, 141
VneI GTGCAC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 141
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.