Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

57189696 .. 57198347

Gene Structure 8652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG418500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTCTTCGTTGTATGCTTGGAAAGCTGGGGAACAATAATAAATTTCTCCACAATAAAGGAAGAGTTACGATGCTCGGTACCTTTGAAGTTTTCAAACACAGAAACAAGGAATTGCTTTCAATGGCTTTCCCTACTCACTCCTCTCCTCGCCATTTTGGCGACCTTGAAAATCGTGCCTCCATTCCAATGGCTACTAGGAGAGAGGTTTTGGATTATCATACAGAAGTAGGAGGACTAAGACCTGCCCGTTTCGCATTGGAAGAGTTCAACAAGATAAAGAAAGCCCAACTACAGCTTGTGAGAGTGGTGGGACTCTGGATGAAGCCACAGGGTTATCCTCATGATCCTTGTCATTGTTTATATGTTGTAGTAATGGAGGCGGTTGATGCCGATGGTGTGGCACTACTTTACCAAGCACGTGTTCAGCTCCATGATTTAACTGAGGGCGGCATGTTTTTGGAAGCAGTCTATGGCTTTTATGATAATTATGGCCTAATAAGATATATTAGACTATATCATCACCTAGGTAATCTACGGTATTATGCTGATGTTAAATTTGGTGATTCAGTTCCTAGTCATGAGTTTAAAGTGAACGTTGGTGGGAAGGGTGAAAGTGCCCATAATGTGGCAGAACAGGGTGGGCTGACTATAAGAGCTGGCTGCAATCCGAAAGATTTCAAAGAAACAGTTTTAGGTTTGACAAATGCAAAGGCAAATGCAGTTAATGAAATGGAATTTGACCCATTGCAGAGGCTAGGGTGCAGCAAACTTAACCGTGAGATATGTCAAATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

266

Amino Acids

30.05

Weight (kDa)

8.81

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	628
AciI	CCGC	2 cut(s)	383, 450
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	3 cut(s)	44, 557, 737
AcvI	CACGTG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	628
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	6 cut(s)	89, 97, 123, 170, 271, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	4 cut(s)	28, 298, 430, 659
AluI	AGCT	4 cut(s)	28, 298, 430, 659
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	663, 765
ApoI	RAATTY	3 cut(s)	44, 557, 737
Asp700I	GAANNNNTTC	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	526
AsuHPI	GGTGA	3 cut(s)	515, 575, 623
AvrII	CCTAGG	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	650, 777
BccI	CCATC	1 cut(s)	389
BfaI	CTAG	4 cut(s)	198, 527, 576, 758
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	3 cut(s)	451, 664, 766
BlnI	CCTAGG	1 cut(s)	526
BlsI	GCNGC	3 cut(s)	452, 665, 767
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	63, 379
BsaAI	YACGTR	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	746
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	2 cut(s)	133, 138
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	2 cut(s)	650, 777
BseYI	CCCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	784
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	2 cut(s)	383, 450
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	436
BspHI	TCATGA	2 cut(s)	343, 580
BspLI	GGNNCC	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	746
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	526
Bst4CI	ACNGT	4 cut(s)	540, 691, 779, 798
Bst6I	CTCTTC	3 cut(s)	12, 58, 258
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	2 cut(s)	239, 444
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 159, 254, 389
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	650, 777
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	661
CciI	TCATGA	2 cut(s)	343, 580
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	4 cut(s)	344, 434, 454, 581
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	239, 444
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraI	TTTAAA	1 cut(s)	589
Eam1104I	CTCTTC	3 cut(s)	12, 58, 258
EarI	CTCTTC	3 cut(s)	12, 58, 258
Eco130I	CCWWGG	1 cut(s)	526
Eco72I	CACGTG	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	4 cut(s)	347, 437, 457, 584
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	4 cut(s)	343, 433, 453, 580
Fnu4HI	GCNGC	3 cut(s)	451, 664, 766
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	451, 664, 766
FspBI	CTAG	4 cut(s)	198, 527, 576, 758
GluI	GCNGC	3 cut(s)	451, 664, 766
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	495
Hin1II	CATG	4 cut(s)	347, 437, 457, 584
HinfI	GANTC	2 cut(s)	315, 566
HphI	GGTGA	3 cut(s)	515, 575, 623
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	3 cut(s)	319, 344, 581
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	4 cut(s)	540, 691, 779, 798
HpyCH4IV	ACGT	2 cut(s)	421, 597
HpyCH4V	TGCA	5 cut(s)	666, 710, 722, 751, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 159, 254, 389
HpyF3I	CTNAG	2 cut(s)	239, 444
HpySE526I	ACGT	2 cut(s)	421, 597
Hsp92II	CATG	4 cut(s)	347, 437, 457, 584
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	346
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	6 cut(s)	14, 258, 304, 317, 623, 645
Lsp1109I	GCAGC	2 cut(s)	650, 777
LweI	GCATC	2 cut(s)	63, 379
MaeI	CTAG	4 cut(s)	198, 527, 576, 758
MaeII	ACGT	2 cut(s)	421, 597
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	2 cut(s)	75, 275
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	5 cut(s)	44, 113, 487, 557, 737
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	9 cut(s)	154, 159, 190, 199, 227, 351, 373, 439, 747
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	5 cut(s)	440, 555, 588, 726, 774
MslI	CAYNNNNRTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	25, 159, 254, 389
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	4 cut(s)	347, 437, 457, 584
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	2 cut(s)	343, 580
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	452, 665, 767
PleI	GAGTC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	597
PspCI	CACGTG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	440, 555, 588, 726, 774
SatI	GCNGC	3 cut(s)	451, 664, 766
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	2 cut(s)	63, 379
SfcI	CTRYAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	5 cut(s)	44, 113, 487, 557, 737
SsiI	CCGC	2 cut(s)	383, 450
SspMI	CTAG	4 cut(s)	198, 527, 576, 758
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	4 cut(s)	540, 691, 779, 798
TaiI	ACGT	2 cut(s)	424, 600
TasI	AATT	5 cut(s)	44, 113, 487, 557, 737
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	5 cut(s)	440, 555, 588, 726, 774
Tru9I	TTAA	5 cut(s)	440, 555, 588, 726, 774
TseI	GCWGC	2 cut(s)	663, 765
TspDTI	ATGAA	2 cut(s)	338, 744
Van91I	CCANNNNNTGG	1 cut(s)	628
XapI	RAATTY	3 cut(s)	44, 557, 737
XceI	RCATGY	1 cut(s)	457
XmaJI	CCTAGG	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	4 cut(s)	198, 527, 576, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.