Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

83025541 .. 83029040

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG527000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCGAGAGTTCTACATTTCAAGAATATGGCTTTTCGTTCTGTGCTTGGAAAGATGGGGAAAACTGTGACTATGACGAGTAGCAAATGTATTCACAAAAATGGAAGACTAGTTTTGAAGCTTGGGAATTTTGAGGCCGAAGCTATCAACCACAAAAACAATAACAATAATAAGGATGCGCCTTCGATGGATGATCCTCTTACTGCTTATCTCTCTGAAATGGGTTGTTATGATGAATATGGGATTCTAATTCCAATGACTGTTAATCGGGGGATTGATTATCATATGGATTTGGGGGGTATAGGGCCTGCCCATTTTGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCGTAAATGTATGTATAGACTAATATTGGAAGCAGCTGATGCCACCGGTGTGGTGAACTTTTACCTAGTGTATGTTAAGATAGATGATTTGACTGAGGGCATGTGGTTGAAAGAATTCAATATTTTCCGTGATAGTGGATACCCTTCAAGACTATATCATCACCTAGACAACTTCTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

195

Amino Acids

22.63

Weight (kDa)

9.03

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	127, 515
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	7 cut(s)	22, 118, 334, 511, 520, 549, 584
AhlI	ACTAGT	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	380
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	3 cut(s)	121, 143, 437
AluI	AGCT	3 cut(s)	121, 143, 437
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	135, 305
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	127, 515
ArsI	GACNNNNNNTTYG	1 cut(s)	560
AsiGI	ACCGGT	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	466, 554
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	2 cut(s)	49, 181
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	533
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	3 cut(s)	110, 467, 566
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	2 cut(s)	392, 435
BlsI	GCNGC	2 cut(s)	393, 436
Bme1390I	CCNGG	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	2 cut(s)	166, 430
BpiI	GAAGAC	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	446
Bse118I	RCCGGY	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	382
BseGI	GGATG	3 cut(s)	181, 196, 390
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	137, 307
BshTI	ACCGGT	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	447
BsnI	GGCC	2 cut(s)	137, 307
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	2 cut(s)	137, 307
BspCNI	CTCAG	1 cut(s)	487
BspPI	GGATC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	446
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	67, 262
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	181, 196, 390
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 440
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	137, 307
BtsCI	GGATG	3 cut(s)	181, 196, 390
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	7 cut(s)	32, 121, 137, 143, 307, 391, 437
CviKI_1	RGCY	7 cut(s)	32, 121, 137, 143, 307, 391, 437
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	505
FatI	CATG	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	392, 435
FokI	GGATG	3 cut(s)	188, 203, 397
Fsp4HI	GCNGC	2 cut(s)	392, 435
FspBI	CTAG	3 cut(s)	110, 467, 566
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	392, 435
HaeIII	GGCC	2 cut(s)	137, 307
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	2 cut(s)	466, 554
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	22, 549
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	192, 555
HpyCH4III	ACNGT	2 cut(s)	67, 262
HpyCH4V	TGCA	2 cut(s)	358, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 440
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	321, 367, 394, 460
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	2 cut(s)	166, 430
MaeI	CTAG	3 cut(s)	110, 467, 566
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	117, 338
MluCI	AATT	3 cut(s)	127, 249, 515
MnlI	CCTC	3 cut(s)	127, 207, 490
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	264, 477
MslI	CAYNNNNRTG	2 cut(s)	99, 449
MspA1I	CMGCKG	2 cut(s)	394, 437
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	317, 440
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	505
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	393, 436
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	437
RseI	CAYNNNNRTG	2 cut(s)	99, 449
SaqAI	TTAA	2 cut(s)	264, 477
SatI	GCNGC	2 cut(s)	392, 435
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	382
SetI	ASST	6 cut(s)	123, 145, 383, 439, 468, 567
SfaNI	GCATC	2 cut(s)	166, 430
SgrAI	CRCCGGYG	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	99, 449
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	3 cut(s)	127, 249, 515
SsiI	CCGC	1 cut(s)	392
SspI	AATATT	2 cut(s)	426, 523
SspMI	CTAG	3 cut(s)	110, 467, 566
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	67, 262
TaqI	TCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	127, 249, 515
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	264, 477
Tru9I	TTAA	2 cut(s)	264, 477
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	249, 401
TspGWI	ACGGA	1 cut(s)	518
XapI	RAATTY	2 cut(s)	127, 515
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	3 cut(s)	110, 467, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.