Rh1AG104900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000459
Physical Location & Seq
Forward (+)
18199307 .. 18200709
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG104900.1

Sequence Viewer

Length: 465 bp
ATGGTGGTGGTCGACACATCGTGCTGGTTCACAGGCAAACAGGCTCCGGCAGCCGGCGATTGGTTCAATCTGATTTCGCAGGTCCACATCCATGCACGGCTGAAAGCCTCCGATCATGGTGGTGTGGTTTGCGATTTGGATGGCAGGATTGGAGGTTTGAAGGATCTTCAACGGGTTGGAGAGTTGGGATGGAATTGGGTTGCGGGTTTAACGAGTTCAGGTGGGTGTTGGCCATGGTTGTTGCGTACTTGGATGGAGGTGGGTTGCGGCTTTGGCTGGCGCGCGGGTAGCGGTGGTGTGATGGCGGCAGTGGAAGTGGTGGTAGGGTTGCCGGGACACCTTTGGGCCTGGAATGTGGGATGGTGTGCTTCTCTTGCTGTCTGCAGTAGTAATTGGGCTTGGGTGTGGTCCATGGGGTCCTTTTTTATTTTCTGGTTTTATTTTATTTTTCTATCTAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.95

Weight (kDa)

6.38

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 12
AccII CGCG 2 cut(s) 282, 284
AciI CCGC 5 cut(s) 203, 267, 284, 291, 305
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 53, 60
AgsI TTSAA 3 cut(s) 67, 160, 170
AjnI CCWGG 1 cut(s) 347
AlwI GGATC 1 cut(s) 171
AoxI GGCC 2 cut(s) 230, 345
ApeKI GCWGC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 282, 284
AspS9I GGNCC 4 cut(s) 82, 345, 408, 417
AsuC2I CCSGG 1 cut(s) 333
AvaII GGWCC 3 cut(s) 82, 408, 417
BalI TGGCCA 1 cut(s) 232
BbvI GCAGC 1 cut(s) 62
BccI CCATC 5 cut(s) 134, 183, 247, 295, 354
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 349
BcnI CCSGG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 382
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 3 cut(s) 51, 268, 306
BlsI GCNGC 3 cut(s) 52, 269, 307
Bme1390I CCNGG 2 cut(s) 333, 349
Bme18I GGWCC 3 cut(s) 82, 408, 417
BmgT120I GGNCC 4 cut(s) 82, 345, 408, 417
BmiI GGNNCC 2 cut(s) 45, 418
BmrFI CCNGG 2 cut(s) 333, 349
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 233, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 60
Bse118I RCCGGY 1 cut(s) 53
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 2 cut(s) 233, 411
BseGI GGATG 5 cut(s) 87, 145, 194, 258, 365
BseLI CCNNNNNNNGG 2 cut(s) 53, 60
BsePI GCGCGC 1 cut(s) 280
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 2 cut(s) 282, 284
BshFI GGCC 2 cut(s) 232, 347
BsiSI CCGG 3 cut(s) 47, 54, 332
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 53, 60
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 2 cut(s) 232, 347
Bsp143I GATC 2 cut(s) 112, 163
Bsp19I CCATGG 2 cut(s) 233, 411
BspACI CCGC 5 cut(s) 203, 267, 284, 291, 305
BspANI GGCC 2 cut(s) 232, 347
BspFNI CGCG 2 cut(s) 282, 284
BspLI GGNNCC 2 cut(s) 45, 418
BspMAI CTGCAG 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 233, 411
BssHII GCGCGC 1 cut(s) 280
BssMI GATC 2 cut(s) 112, 163
BssT1I CCWWGG 2 cut(s) 233, 411
Bst2UI CCWGG 1 cut(s) 349
BstC8I GCNNGC 3 cut(s) 55, 278, 282
BstDSI CCRYGG 2 cut(s) 233, 411
BstF5I GGATG 5 cut(s) 87, 145, 194, 258, 365
BstFNI CGCG 2 cut(s) 282, 284
BstHHI GCGC 2 cut(s) 282, 284
BstKTI GATC 2 cut(s) 115, 166
BstMBI GATC 2 cut(s) 112, 163
BstMWI GCNNNNNNNGC 4 cut(s) 50, 273, 288, 374
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 331, 347
BstSFI CTRYAG 1 cut(s) 382
BstUI CGCG 2 cut(s) 282, 284
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 2 cut(s) 232, 347
BtgI CCRYGG 2 cut(s) 233, 411
BtsCI GGATG 5 cut(s) 87, 145, 194, 258, 365
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 55, 278, 282
CfoI GCGC 2 cut(s) 282, 284
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 82, 345, 408, 417
Csp6I GTAC 1 cut(s) 246
CviAII CATG 4 cut(s) 92, 116, 234, 412
CviJI RGCY 9 cut(s) 44, 53, 100, 107, 232, 270, 276, 347, 398
CviKI_1 RGCY 9 cut(s) 44, 53, 100, 107, 232, 270, 276, 347, 398
CviQI GTAC 1 cut(s) 246
DpnI GATC 2 cut(s) 114, 165
DpnII GATC 2 cut(s) 112, 163
DraIII CACNNNGTG 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 230
Eco130I CCWWGG 2 cut(s) 233, 411
Eco47I GGWCC 3 cut(s) 82, 408, 417
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 347
EcoT14I CCWWGG 2 cut(s) 233, 411
ErhI CCWWGG 2 cut(s) 233, 411
FaeI CATG 4 cut(s) 95, 119, 237, 415
FaiI YATR 4 cut(s) 93, 117, 235, 413
FaqI GGGAC 1 cut(s) 348
FatI CATG 4 cut(s) 91, 115, 233, 411
FauI CCCGC 2 cut(s) 196, 277
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 51, 268, 306
FokI GGATG 5 cut(s) 74, 152, 201, 265, 372
Fsp4HI GCNGC 3 cut(s) 51, 268, 306
GlaI GCGC 2 cut(s) 281, 283
GluI GCNGC 3 cut(s) 51, 268, 306
HaeIII GGCC 2 cut(s) 232, 347
HapII CCGG 3 cut(s) 47, 54, 332
HhaI GCGC 2 cut(s) 282, 284
Hin1II CATG 4 cut(s) 95, 119, 237, 415
Hin6I GCGC 2 cut(s) 280, 282
HinP1I GCGC 2 cut(s) 280, 282
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HpaII CCGG 3 cut(s) 47, 54, 332
Hpy166II GTNNAC 3 cut(s) 13, 30, 85
Hpy188I TCNGA 2 cut(s) 72, 112
Hpy8I GTNNAC 3 cut(s) 13, 30, 85
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 95, 384
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 273, 288, 374
Hsp92II CATG 4 cut(s) 95, 119, 237, 415
HspAI GCGC 2 cut(s) 280, 282
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 112, 163
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 1 cut(s) 62
MalI GATC 2 cut(s) 114, 165
MboI GATC 2 cut(s) 112, 163
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 3 cut(s) 193, 391, 460
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 3 cut(s) 118, 146, 250
Mox20I TGGCCA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 53
MscI TGGCCA 1 cut(s) 232
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 2 cut(s) 90, 120
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 3 cut(s) 47, 54, 332
MspR9I CCNGG 2 cut(s) 333, 349
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 2 cut(s) 282, 284
MwoI GCNNNNNNNGC 4 cut(s) 50, 273, 288, 374
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 2 cut(s) 233, 411
NdeII GATC 2 cut(s) 112, 163
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 95, 119, 237, 415
NlaIV GGNNCC 2 cut(s) 45, 418
PauI GCGCGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 52, 269, 307
PpuMI RGGWCCY 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 45, 418
PspPI GGNCC 4 cut(s) 82, 345, 408, 417
PspPPI RGGWCCY 1 cut(s) 417
PstI CTGCAG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 163
PteI GCGCGC 1 cut(s) 280
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 2 cut(s) 90, 120
SalI GTCGAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 51, 268, 306
Sau3AI GATC 2 cut(s) 112, 163
Sau96I GGNCC 4 cut(s) 82, 345, 408, 417
ScrFI CCNGG 2 cut(s) 333, 349
SetI ASST 5 cut(s) 84, 157, 223, 261, 342
SfcI CTRYAG 1 cut(s) 382
SinI GGWCC 3 cut(s) 82, 408, 417
SmiMI CAYNNNNRTG 2 cut(s) 90, 120
Sse9I AATT 3 cut(s) 193, 391, 460
SsiI CCGC 5 cut(s) 203, 267, 284, 291, 305
StyD4I CCNGG 2 cut(s) 331, 347
StyI CCWWGG 2 cut(s) 233, 411
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 193, 391, 460
TauI GCSGC 2 cut(s) 270, 308
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 50
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 3 cut(s) 82, 408, 417
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.