Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

35921454 .. 35922732

Gene Structure 1279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTTTCGTTCTGTGCTTGGAAAGATGGGGACTACTACTATGACTATGGCTAGTAGTAAATGTATTCACAAAAACAGAAGACTAGTTTTGATGCTTCACAATTGCGAGGCCGAAGCGCACAAGAAGAATCACAACCACAATCACAGGAACAATAAGAAGAAGGCGCCTGTAGTGCGTACTGCTGCTAATGCTTATCTGTTTGAATTCGGGTGTATTGATGAAAATGGGTTTCGAATTCCGTTGACTGTTAATAGGGGAATCGATTATCATATGGATTTAGGAGGAATAGGACCTGCCTGTTTCGCTGTGGAAGAGTTCAACAAGCGAAAGAAATCACAACTGCAATTTGTGAGACTACAGAGAACTTGGATGAAGCCGCTGTATCATCGCGCATGTGTATATGAACTAATCTTGGAGGCGGTTGATGCCGCCGGTGTGGTAAATCTTTACCTGGCATATGTCAAGATGAATGATATGAAGGAGAGGGGAATGTGGTTGAAAGAAATATATATTTTCCATGATACCGGATACCCTTCAAGACTATATCATTATCTGGATAACTTTTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

193

Amino Acids

22.39

Weight (kDa)

9.43

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	393
AciI	CCGC	3 cut(s)	380, 422, 432
AcsI	RAATTY	2 cut(s)	206, 237
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	206, 322, 502, 540, 575
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	206, 237
AspLEI	GCGC	3 cut(s)	121, 169, 395
AspS9I	GGNCC	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	349
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	54, 86
BfmI	CTRYAG	2 cut(s)	171, 359
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	524
BisI	GCNGC	3 cut(s)	186, 380, 432
BlsI	GCNGC	3 cut(s)	187, 381, 433
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	84, 418
BpiI	GAAGAC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	527
Bse118I	RCCGGY	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	455
BseCI	ATCGAT	1 cut(s)	264
BseGI	GGATG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	435, 528
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	235
BspACI	CCGC	3 cut(s)	380, 422, 432
BspANI	GGCC	1 cut(s)	113
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	304
BspT104I	TTCGAA	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	434
BssNI	GRCGYC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	121, 169, 395
BstMAI	GTCTC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 191, 305, 428
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	2 cut(s)	171, 359
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	304
CfoI	GCGC	3 cut(s)	121, 169, 395
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	396, 521
CviJI	RGCY	4 cut(s)	5, 53, 113, 379
CviKI_1	RGCY	4 cut(s)	5, 53, 113, 379
CviQI	GTAC	1 cut(s)	180
DinI	GGCGCC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	2 cut(s)	206, 237
EcoRII	CCWGG	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
FaeI	CATG	2 cut(s)	399, 524
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	395, 520
FauNDI	CATATG	2 cut(s)	273, 460
Fnu4HI	GCNGC	3 cut(s)	186, 380, 432
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	186, 380, 432
FspBI	CTAG	2 cut(s)	54, 86
GlaI	GCGC	3 cut(s)	120, 168, 394
GluI	GCNGC	3 cut(s)	186, 380, 432
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	435, 528
HhaI	GCGC	3 cut(s)	121, 169, 395
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	399, 524
Hin6I	GCGC	3 cut(s)	119, 167, 393
HinP1I	GCGC	3 cut(s)	119, 167, 393
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	130, 261
HpaII	CCGG	2 cut(s)	435, 528
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	466, 540, 557
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	3 cut(s)	157, 475, 546
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 191, 305, 428
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	399, 524
HspAI	GCGC	3 cut(s)	119, 167, 393
KasI	GGCGCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	133, 183, 309, 313, 440, 448, 467, 541, 542
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	84, 418
MaeI	CTAG	2 cut(s)	54, 86
MboII	GAAGA	4 cut(s)	93, 139, 172, 326
MfeI	CAATTG	1 cut(s)	103
MluCI	AATT	4 cut(s)	103, 206, 237, 347
Mly113I	GGCGCC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	103, 278, 412, 480
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	2 cut(s)	435, 528
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	175, 191, 305, 428
NarI	GGCGCC	1 cut(s)	167
NdeI	CATATG	2 cut(s)	273, 460
NlaIII	CATG	2 cut(s)	399, 524
NlaIV	GGNNCC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	130, 261
PkrI	GCNGC	3 cut(s)	187, 381, 433
PluTI	GGCGCC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	186, 380, 432
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	2 cut(s)	298, 456
SfaNI	GCATC	2 cut(s)	84, 418
SfcI	CTRYAG	2 cut(s)	171, 359
SfoI	GGCGCC	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	4 cut(s)	103, 206, 237, 347
SsiI	CCGC	3 cut(s)	380, 422, 432
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	54, 86
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	235, 264
TasI	AATT	4 cut(s)	103, 206, 237, 347
TauI	GCSGC	2 cut(s)	382, 434
TfiI	GAWTC	2 cut(s)	130, 261
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	237, 389, 420, 485, 494
TspGWI	ACGGA	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	2 cut(s)	206, 237
XceI	RCATGY	1 cut(s)	399
XspI	CTAG	2 cut(s)	54, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.