FvH4_4g18202

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000459
Physical Location & Seq
Reverse (-)
22175642 .. 22177093
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18202.t1

Sequence Viewer

Length: 597 bp
ATGCCTGAGGCGGTGGCCTCTCAGGCCCTCAGAACCGCACGTACTCAATCACACGTATTCCAATTTCTTGGCCGAAGTAACGCCGCCACGATTAAAACCCGGCTATCAACTACCCAATTTGCCGGAATCTCCTCCAACCTTCACAAGCTGCTCAAATGGCATTTAGAGGTCGAGGTGGTTTTGGACGAGGTGGCTTTGGACGTGCTAAAGAGGAACCCTTTGTGTTGTTTCCTGATATTAACCTACCTGATGCCTCCGATTTTAACATCCTTGTCAAATAAGAGGAAAAACAACGAGGAAGAGATTTTGTTGATCAAAGAGAGCCTGGGGTGGCTGGAGGAGACGACAGAGTATTATCTTGACCAGACTGCAGGGAAAGATAAGAGGCGAAAGGAAGATGGAACAGGAAAGGGATGCCAAGGAAAGATGAAACCTGAAAAGGGTGAGGATGAAGATGAAAGTGATGGTGATGAGGAAGACGAAGAGAATATATTTGAATTTGACGATGATTATACTGAACATCTGAAGGCAGACGATGATGAAGATGATTATAATGATGAGGAGGAGGGTGCCGATGAACCCGAGTTGGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.62

Weight (kDa)

4.38

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 569
AciI CCGC 3 cut(s) 11, 36, 84
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 497
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 3 cut(s) 15, 24, 70
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 497
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 455, 479
AvaI CYCGRG 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 6
BanI GGYRCC 1 cut(s) 569
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 392, 458
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 369
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 2 cut(s) 84, 149
BlsI GCNGC 2 cut(s) 85, 150
Bme1390I CCNGG 2 cut(s) 100, 326
BmeT110I CYCGRG 1 cut(s) 581
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 215, 571
BmrFI CCNGG 2 cut(s) 100, 326
BmsI GCATC 2 cut(s) 240, 404
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 100
BsaAI YACGTR 2 cut(s) 41, 55
BsaJI CCNNGG 2 cut(s) 325, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 325, 418
BseGI GGATG 3 cut(s) 266, 419, 454
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 2 cut(s) 35, 43
BseRI GAGGAG 4 cut(s) 121, 353, 575, 578
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 3 cut(s) 17, 26, 72
BshNI GGYRCC 1 cut(s) 569
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 2 cut(s) 100, 123
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 335
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 3 cut(s) 17, 26, 72
BsoBI CYCGRG 1 cut(s) 581
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 3 cut(s) 11, 36, 84
BspANI GGCC 3 cut(s) 17, 26, 72
BspCNI CTCAG 2 cut(s) 34, 42
BspLI GGNNCC 2 cut(s) 215, 571
BspMAI CTGCAG 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 569
BssECI CCNNGG 2 cut(s) 325, 418
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 326
Bst6I CTCTTC 2 cut(s) 294, 477
BstBAI YACGTR 2 cut(s) 41, 55
BstDEI CTNAG 3 cut(s) 6, 21, 29
BstF5I GGATG 3 cut(s) 266, 419, 454
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 23, 157
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 98, 324
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 483
BstXI CCANNNNNNTGG 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 17, 26, 72
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 3 cut(s) 266, 419, 454
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 8 cut(s) 17, 26, 72, 103, 148, 194, 324, 334
CviKI_1 RGCY 8 cut(s) 17, 26, 72, 103, 148, 194, 324, 334
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 3 cut(s) 6, 21, 29
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 294, 477
EarI CTCTTC 2 cut(s) 294, 477
Eco130I CCWWGG 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 335
FaiI YATR 3 cut(s) 491, 513, 552
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 84, 149
FokI GGATG 3 cut(s) 253, 426, 461
Fsp4HI GCNGC 2 cut(s) 84, 149
GluI GCNGC 2 cut(s) 84, 149
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 3 cut(s) 17, 26, 72
HapII CCGG 2 cut(s) 100, 123
HinfI GANTC 1 cut(s) 126
HpaII CCGG 2 cut(s) 100, 123
HphI GGTGA 2 cut(s) 455, 479
Hpy188I TCNGA 3 cut(s) 32, 258, 525
Hpy188III TCNNGA 2 cut(s) 232, 359
HpyAV CCTTC 2 cut(s) 149, 520
HpyCH4IV ACGT 3 cut(s) 40, 54, 201
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 157
HpyF3I CTNAG 3 cut(s) 6, 21, 29
HpySE526I ACGT 3 cut(s) 40, 54, 201
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 1 cut(s) 312
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 240, 404
MaeII ACGT 3 cut(s) 40, 54, 201
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 6 cut(s) 311, 407, 464, 488, 494, 554
MluCI AATT 3 cut(s) 62, 116, 497
MmeI TCCRAC 2 cut(s) 159, 567
MseI TTAA 3 cut(s) 93, 239, 263
MspI CCGG 2 cut(s) 100, 123
MspR9I CCNGG 2 cut(s) 100, 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 23, 157
NciI CCSGG 1 cut(s) 100
NdeII GATC 1 cut(s) 312
NlaIV GGNNCC 2 cut(s) 215, 571
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 85, 150
Ppu21I YACGTR 2 cut(s) 41, 55
PsiI TTATAA 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 215, 571
PspPI GGNCC 1 cut(s) 25
PsrI GAACNNNNNNTAC 2 cut(s) 25, 57
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 93, 239, 263
SatI GCNGC 2 cut(s) 84, 149
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 100, 326
SfaNI GCATC 2 cut(s) 240, 404
SfcI CTRYAG 1 cut(s) 369
SfiI GGCCNNNNNGGCC 1 cut(s) 23
Sse9I AATT 3 cut(s) 62, 116, 497
SsiI CCGC 3 cut(s) 11, 36, 84
StyD4I CCNGG 2 cut(s) 98, 324
StyI CCWWGG 1 cut(s) 418
TaiI ACGT 3 cut(s) 43, 57, 204
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 62, 116, 497
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 3 cut(s) 93, 239, 263
Tru9I TTAA 3 cut(s) 93, 239, 263
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 5 cut(s) 443, 465, 471, 555, 591
XapI RAATTY 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.