Rroxscaffold_2G00101900

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
23870898 .. 23871741
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101900.1

Sequence Viewer

Length: 309 bp
ATGGCTCTTCGTTGTATGCTTGGAAAGCTGGGGAACAATAATAGATTTCTCCACAATAAAGGAAGAGTTACGATGCTTGGTACCTTTGAAGTTTTCAAACACAAAAACAAGGAATTGCTTTCAATGGCTTTCCCTACTTATTCCTCTCCTCGCCATTTTGGGGACCTTGAAAATCGTGCCTCCATACCAATGGCTACTAGGAGAGAGGTTTTGGATTATCATACGGAAGTAGGAGGACTAAGACCTGCCCGTTTCGCAGTGGAAGAGTTCAACAAGATAAAGGTATCTGCCAATGATCTTCATAATTGA

Protein Analysis

102

Amino Acids

11.69

Weight (kDa)

9.91

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 5 cut(s) 89, 97, 123, 170, 271
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 80
BfaI CTAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 82, 164
BmsI GCATC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 82, 164
BspMI ACCTGC 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 80
BssMI GATC 1 cut(s) 295
Bst6I CTCTTC 3 cut(s) 12, 58, 258
BstDEI CTNAG 1 cut(s) 239
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 25, 254
BstXI CCANNNNNNTGG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 4 cut(s) 5, 28, 128, 194
CviKI_1 RGCY 4 cut(s) 5, 28, 128, 194
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 1 cut(s) 239
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eam1104I CTCTTC 3 cut(s) 12, 58, 258
EarI CTCTTC 3 cut(s) 12, 58, 258
Eco47I GGWCC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 163
FaiI YATR 4 cut(s) 17, 185, 222, 303
FaqI GGGAC 1 cut(s) 176
FspBI CTAG 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 254
HpyF3I CTNAG 1 cut(s) 239
KpnI GGTACC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 295
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 2 cut(s) 14, 258
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 75, 275, 290
MluCI AATT 2 cut(s) 113, 304
MnlI CCTC 5 cut(s) 154, 159, 190, 199, 227
MslI CAYNNNNRTG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 25, 254
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 82, 164
PciSI GCTCTTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 82, 164
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 163
SetI ASST 6 cut(s) 30, 86, 168, 210, 247, 285
SfaNI GCATC 1 cut(s) 63
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 113, 304
SspMI CTAG 1 cut(s) 198
TasI AATT 2 cut(s) 113, 304
TscAI CASTG 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 163
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.