Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

2611922 .. 2614309

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G034400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTCAAGCAGGTTGTCAAAAGGCTCAAAACCCACAAACAAAATCACTATATTGACCTCAGATTTCACATATGTAGCAGTCCAAATCTCTATCGATGGCTGCCAAAGAAAGAGAGACAATTGGGAGGTGAGAGACAAAGGGTGAATTGTTGGTTAGGATTTGATGATGTCGAAGAGAGAAGGAGGGGACGGCGGCGAAGACAAAGGGTTATGGCTGTTCGTTCTGTGCTTGGAAAGCTGGGTAGGAGTAGATTTATTCCCGACAATGGAAGACTTATCATGGTTGGTAGTTCTCCTACTGTTTGTTCCTCTCCTCATCACCCTTCTGATTATTATGGGGTCGTCCATGATCAAAACAAAGCGGATCAAAAAAGCAACCCTTTTCTTCTTGGATCGCTTATGAAAGACCCAGTTTATTGTCATTTGGATTTTGGAGGACTAGGACCTGCTCGTTTCGCCATCGAAGAGTTGAGGAAGAAAAGGAATATCCAACTGCAGTCTGTGAGAGTGCTGAGGGTGTTAGCAGAGAAAGATGTTGGCTTGCCACGATATGATTCTTACTATGATCTACTGCTGGAGGCAGTTGATGCCGATGTGATGAGATATTTCGAAGTAACAGTGTCACTTAATTCCAGGGGTGGCTTGTGGTTGGAAGACTTTTGTCTTCTCGTTGATAATAAAAAACCTATAAGATTATATCATCACCTAGGTACTATAATTATGGCATGCTGCTTTCACAATATCCTTAAGAATTTAGTACAAGAAAAAGCATTAGTACAGAATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

263

Amino Acids

30.43

Weight (kDa)

9.76

Isoelectric Point (pI)

71.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AciI	CCGC	2 cut(s)	193, 362
AclWI	GGATC	2 cut(s)	372, 400
AcsI	RAATTY	1 cut(s)	751
AfaI	GTAC	3 cut(s)	712, 759, 777
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflII	CTTAAG	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	632
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	109, 127
AlwI	GGATC	2 cut(s)	372, 400
ApeKI	GCWGC	2 cut(s)	100, 729
ApoI	RAATTY	1 cut(s)	751
AspA2I	CCTAGG	1 cut(s)	706
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	140, 154, 311, 695
AsuII	TTCGAA	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	706
BbsI	GAAGAC	4 cut(s)	205, 277, 656, 660
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	87, 716
BccI	CCATC	2 cut(s)	90, 467
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	634
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	109, 127
BfaI	CTAG	3 cut(s)	440, 707, 787
BfmI	CTRYAG	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	3 cut(s)	101, 194, 730
BlnI	CCTAGG	1 cut(s)	706
BlsI	GCNGC	3 cut(s)	102, 195, 731
Bme1390I	CCNGG	1 cut(s)	634
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	634
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	404
BoxI	GACNNNNGTC	1 cut(s)	660
BpiI	GAAGAC	4 cut(s)	205, 277, 656, 660
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	609
Bsa29I	ATCGAT	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	633, 706
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	634
BseCI	ATCGAT	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	633, 706
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	73, 503
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	87, 716
BseYI	CCCAGC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	109, 127
BsmFI	GGGAC	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	349, 364, 392, 565
BspACI	CCGC	2 cut(s)	193, 362
BspCNI	CTCAG	2 cut(s)	72, 504
BspDI	ATCGAT	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	372, 400
BspT104I	TTCGAA	1 cut(s)	609
BspTI	CTTAAG	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	633, 706
BssMI	GATC	4 cut(s)	349, 364, 392, 565
BssT1I	CCWWGG	1 cut(s)	706
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	2 cut(s)	301, 619
Bst6I	CTCTTC	2 cut(s)	168, 459
BstAFI	CTTAAG	1 cut(s)	746
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	609
BstC8I	GCNNGC	2 cut(s)	542, 727
BstDEI	CTNAG	2 cut(s)	59, 512
BstKTI	GATC	4 cut(s)	352, 367, 395, 568
BstMAI	GTCTC	2 cut(s)	109, 127
BstMBI	GATC	4 cut(s)	349, 364, 392, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 455, 587
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	1 cut(s)	729
BstPAI	GACNNNNGTC	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	87, 716
BstV2I	GAAGAC	4 cut(s)	205, 277, 656, 660
Bsu15I	ATCGAT	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	542, 727
Cfr13I	GGNCC	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	711, 758, 776
CviAII	CATG	3 cut(s)	280, 347, 726
CviJI	RGCY	7 cut(s)	25, 100, 215, 238, 540, 642, 786
CviKI_1	RGCY	7 cut(s)	25, 100, 215, 238, 540, 642, 786
CviQI	GTAC	3 cut(s)	711, 758, 776
DdeI	CTNAG	2 cut(s)	59, 512
DpnI	GATC	4 cut(s)	351, 366, 394, 567
DpnII	GATC	4 cut(s)	349, 364, 392, 565
Eam1104I	CTCTTC	2 cut(s)	168, 459
EarI	CTCTTC	2 cut(s)	168, 459
Eco130I	CCWWGG	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	3 cut(s)	283, 350, 729
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	3 cut(s)	279, 346, 725
FauNDI	CATATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	101, 194, 730
Fsp4HI	GCNGC	3 cut(s)	101, 194, 730
FspBI	CTAG	3 cut(s)	440, 707, 787
GluI	GCNGC	3 cut(s)	101, 194, 730
GsaI	CCCAGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	596
Hin1II	CATG	3 cut(s)	283, 350, 729
HinfI	GANTC	1 cut(s)	554
HphI	GGTGA	4 cut(s)	140, 154, 311, 695
Hpy188I	TCNGA	2 cut(s)	62, 328
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	174, 333
HpyCH4III	ACNGT	2 cut(s)	301, 619
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 455, 587
HpyF3I	CTNAG	2 cut(s)	59, 512
Hsp92II	CATG	3 cut(s)	283, 350, 729
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	349, 364, 392, 565
LpnPI	CCDG	6 cut(s)	224, 423, 459, 560, 619, 646
Lsp1109I	GCAGC	2 cut(s)	87, 716
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	3 cut(s)	440, 707, 787
MaeIII	GTNAC	2 cut(s)	613, 621
MalI	GATC	4 cut(s)	351, 366, 394, 567
MboI	GATC	4 cut(s)	349, 364, 392, 565
MboII	GAAGA	8 cut(s)	185, 210, 282, 377, 476, 487, 656, 665
MfeI	CAATTG	1 cut(s)	119
MluCI	AATT	5 cut(s)	119, 145, 628, 717, 751
MmeI	TCCRAC	2 cut(s)	514, 630
MnlI	CCTC	9 cut(s)	68, 119, 177, 319, 324, 428, 465, 507, 571
MseI	TTAA	2 cut(s)	627, 747
MspCI	CTTAAG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	634
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	3 cut(s)	235, 455, 587
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	349, 364, 392, 565
NlaIII	CATG	3 cut(s)	283, 350, 729
NmuCI	GTSAC	1 cut(s)	621
NspI	RCATGY	1 cut(s)	729
NspV	TTCGAA	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	102, 195, 731
PpuMI	RGGWCCY	1 cut(s)	443
PshAI	GACNNNNGTC	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	632
PspPI	GGNCC	1 cut(s)	443
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	498
RsaI	GTAC	3 cut(s)	712, 759, 777
RsaNI	GTAC	3 cut(s)	711, 758, 776
SaqAI	TTAA	2 cut(s)	627, 747
SatI	GCNGC	3 cut(s)	101, 194, 730
Sau3AI	GATC	4 cut(s)	349, 364, 392, 565
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	634
SetI	ASST	8 cut(s)	15, 60, 130, 240, 448, 688, 708, 712
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	609
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
SphI	GCATGC	1 cut(s)	729
Sse9I	AATT	5 cut(s)	119, 145, 628, 717, 751
SsiI	CCGC	2 cut(s)	193, 362
SspMI	CTAG	3 cut(s)	440, 707, 787
StyD4I	CCNGG	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	2 cut(s)	301, 619
TaqI	TCGA	4 cut(s)	94, 171, 462, 609
TasI	AATT	5 cut(s)	119, 145, 628, 717, 751
TatI	WGTACW	2 cut(s)	757, 775
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	2 cut(s)	627, 747
Tru9I	TTAA	2 cut(s)	627, 747
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	2 cut(s)	100, 729
Tsp45I	GTSAC	1 cut(s)	621
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	624
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	1 cut(s)	729
XmaJI	CCTAGG	1 cut(s)	706
XspI	CTAG	3 cut(s)	440, 707, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.