Rmu_sc0003323.1_g000013

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003323.1
Physical Location & Seq
Forward (+)
95548 .. 98332
2785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003323.1_g000013.1.cds

Sequence Viewer

Length: 1098 bp
atgagatatccaacgacctctttggggacatccggtgacaggaatcaggcggcccatgacagggctccggcgaagtctcgtatggtttttgtcacggacacgttctcgagtagggaattttttttcgcttccctcaagtccgtgatggcgccttgctgccccccatatgacaacaagaccagcctagcacacctcagagtagaatgtgcttatcactctagtggttcgctgccaacccacactcaaagtggacaccaatcgaggttaaccctcgagtctccctccttgcctgctaatgggccaatgttggctttgcctgctgcctgcatgcttggctggcgaggcttgctctctcaaacactagactcccttaccttgtcttccttggacaacccttgttgcccttcgacactcgaggtcaagttagcgttcaatcgggccccaaccttgacttcttcctctgctattctctgttctaaatttcaagctgctctactcagagttctacatttcaagaatatggcttttcgttctgtgcttggaaagatggggaaaactgtgactatgacgagtagcaaatgtattcacaaaaatggaagactagttttgaagcttgggaattttgaggccgaagctatcaaccacaaaaacaataacaataataaggatgcgccttcgatggatgatcctcttactgcttatctctctgaaatgggttgttatgatgaatatgggattctaattccaatgactgttaatcggtatcccattactctctttttatatgaacaggggattgattatcatatggatttggggggtatagggcctgcccattttgctgtggaagagttcaacaagcgaaagaaaacccaactgcaacttgtgagagtgcagagaacctggatgaagccgctgtatcatcgtaaatgtatgtatagactaatattggaagcagctgatgccaccggtgtggtgaacttttacctagtgtatgttaagatagatgatttgactgagggcatgtggttgaaagaattcaatattttccgtgatagtggatacccttcaagactatatcatcacctaggtaactaa

Protein Analysis

365

Amino Acids

40.91

Weight (kDa)

9.06

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 2 cut(s) 50, 914
AclWI GGATC 1 cut(s) 680
AcsI RAATTY 4 cut(s) 116, 479, 619, 1037
AcyI GRCGYC 1 cut(s) 149
AfiI CCNNNNNNNGG 5 cut(s) 24, 39, 60, 61, 296
AflIII ACRYGT 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 968
AgsI TTSAA 8 cut(s) 433, 485, 514, 610, 856, 1033, 1042, 1071
AhlI ACTAGT 1 cut(s) 601
AjnI CCWGG 1 cut(s) 902
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AleI CACNNNNGTG 2 cut(s) 219, 971
AluBI AGCT 4 cut(s) 488, 613, 635, 959
AluI AGCT 4 cut(s) 488, 613, 635, 959
Alw26I GTCTC 2 cut(s) 81, 282
AlwI GGATC 1 cut(s) 680
Ama87I CYCGRG 3 cut(s) 106, 272, 413
AoxI GGCC 5 cut(s) 51, 299, 438, 627, 827
ApaI GGGCCC 1 cut(s) 442
ApeKI GCWGC 5 cut(s) 156, 229, 320, 488, 956
ApoI RAATTY 4 cut(s) 116, 479, 619, 1037
AsiGI ACCGGT 1 cut(s) 968
Asp700I GAANNNNTTC 1 cut(s) 1037
AspA2I CCTAGG 1 cut(s) 1087
AspLEI GCGC 2 cut(s) 151, 673
AspS9I GGNCC 5 cut(s) 52, 299, 438, 439, 827
AsuHPI GGTGA 3 cut(s) 47, 988, 1076
AvaI CYCGRG 3 cut(s) 106, 272, 413
AvrII CCTAGG 1 cut(s) 1087
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 67, 442
BbsI GAAGAC 2 cut(s) 372, 604
BbvI GCAGC 5 cut(s) 143, 216, 307, 475, 968
BccI CCATC 3 cut(s) 139, 541, 673
BciT130I CCWGG 1 cut(s) 904
BciVI GTATCC 2 cut(s) 774, 1055
BcoDI GTCTC 2 cut(s) 81, 282
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 6 cut(s) 185, 219, 362, 602, 989, 1088
BfoI RGCGCY 1 cut(s) 152
BfuI GTATCC 2 cut(s) 774, 1055
BisI GCNGC 7 cut(s) 51, 157, 230, 321, 489, 914, 957
BlnI CCTAGG 1 cut(s) 1087
BlsI GCNGC 7 cut(s) 52, 158, 231, 322, 490, 915, 958
Bme1390I CCNGG 1 cut(s) 904
BmeT110I CYCGRG 3 cut(s) 106, 272, 413
BmgT120I GGNCC 5 cut(s) 52, 299, 438, 439, 827
BmiI GGNNCC 4 cut(s) 66, 150, 440, 441
BmrFI CCNGG 1 cut(s) 904
BmsI GCATC 2 cut(s) 658, 952
BpiI GAAGAC 2 cut(s) 372, 604
BplI GAGNNNNNCTC 4 cut(s) 266, 298, 333, 365
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 384, 1087
BsaWI WCCGGW 2 cut(s) 32, 968
Bsc4I CCNNNNNNNGG 5 cut(s) 24, 39, 60, 61, 296
Bse118I RCCGGY 1 cut(s) 968
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 2 cut(s) 384, 1087
BseGI GGATG 4 cut(s) 29, 673, 688, 912
BseLI CCNNNNNNNGG 5 cut(s) 24, 39, 60, 61, 296
BseMII CTCAG 3 cut(s) 208, 511, 1008
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 5 cut(s) 143, 216, 307, 475, 968
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 5 cut(s) 53, 301, 440, 629, 829
BshNI GGYRCC 1 cut(s) 148
BshTI ACCGGT 1 cut(s) 968
BsiHKCI CYCGRG 3 cut(s) 106, 272, 413
BsiSI CCGG 3 cut(s) 33, 68, 969
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 5 cut(s) 24, 39, 60, 61, 296
BsmAI GTCTC 2 cut(s) 81, 282
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 5 cut(s) 53, 301, 440, 629, 829
BsoBI CYCGRG 3 cut(s) 106, 272, 413
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 67, 442
Bsp143I GATC 1 cut(s) 685
BspACI CCGC 2 cut(s) 50, 914
BspANI GGCC 5 cut(s) 53, 301, 440, 629, 829
BspCNI CTCAG 3 cut(s) 207, 510, 1009
BspLI GGNNCC 4 cut(s) 66, 150, 440, 441
BspPI GGATC 1 cut(s) 680
BspT107I GGYRCC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 968
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 2 cut(s) 384, 1087
BssMI GATC 1 cut(s) 685
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 384, 1087
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 2 cut(s) 559, 754
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 962
BstC8I GCNNGC 7 cut(s) 291, 318, 325, 329, 338, 347, 831
BstDEI CTNAG 3 cut(s) 194, 497, 1017
BstF5I GGATG 4 cut(s) 29, 673, 688, 912
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 151, 673
BstKTI GATC 1 cut(s) 688
BstMAI GTCTC 2 cut(s) 81, 282
BstMBI GATC 1 cut(s) 685
BstMWI GCNNNNNNNGC 7 cut(s) 317, 333, 337, 342, 346, 839, 962
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 2 cut(s) 331, 1027
BstSCI CCNGG 1 cut(s) 902
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 5 cut(s) 143, 216, 307, 475, 968
BstV2I GAAGAC 2 cut(s) 372, 604
BstXI CCANNNNNNTGG 1 cut(s) 973
BsuI GTATCC 2 cut(s) 774, 1055
BsuRI GGCC 5 cut(s) 53, 301, 440, 629, 829
BtsCI GGATG 4 cut(s) 29, 673, 688, 912
Cac8I GCNNGC 7 cut(s) 291, 318, 325, 329, 338, 347, 831
CfoI GCGC 2 cut(s) 151, 673
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 5 cut(s) 52, 299, 438, 439, 827
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 3 cut(s) 56, 328, 1024
DdeI CTNAG 3 cut(s) 194, 497, 1017
DinI GGCGCC 1 cut(s) 150
DpnI GATC 1 cut(s) 687
DpnII GATC 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 2 cut(s) 384, 1087
Eco24I GRGCYC 2 cut(s) 67, 442
Eco32I GATATC 1 cut(s) 8
Eco88I CYCGRG 3 cut(s) 106, 272, 413
EcoO109I RGGNCCY 2 cut(s) 439, 827
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 1 cut(s) 902
EcoRV GATATC 1 cut(s) 8
EcoT14I CCWWGG 2 cut(s) 384, 1087
EcoT38I GRGCYC 2 cut(s) 67, 442
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 384, 1087
FaeI CATG 3 cut(s) 59, 331, 1027
FaqI GGGAC 1 cut(s) 40
FatI CATG 3 cut(s) 55, 327, 1023
FauNDI CATATG 2 cut(s) 166, 807
Fnu4HI GCNGC 7 cut(s) 51, 157, 230, 321, 489, 914, 957
FokI GGATG 4 cut(s) 16, 680, 695, 919
FriOI GRGCYC 2 cut(s) 67, 442
Fsp4HI GCNGC 7 cut(s) 51, 157, 230, 321, 489, 914, 957
FspBI CTAG 6 cut(s) 185, 219, 362, 602, 989, 1088
GlaI GCGC 2 cut(s) 150, 672
GluI GCNGC 7 cut(s) 51, 157, 230, 321, 489, 914, 957
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 5 cut(s) 53, 301, 440, 629, 829
HapII CCGG 3 cut(s) 33, 68, 969
HhaI GCGC 2 cut(s) 151, 673
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 3 cut(s) 59, 331, 1027
Hin6I GCGC 2 cut(s) 149, 671
HinP1I GCGC 2 cut(s) 149, 671
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 4 cut(s) 43, 275, 365, 736
HpaI GTTAAC 1 cut(s) 267
HpaII CCGG 3 cut(s) 33, 68, 969
HphI GGTGA 3 cut(s) 47, 988, 1076
Hpy166II GTNNAC 3 cut(s) 251, 267, 979
Hpy188I TCNGA 3 cut(s) 197, 500, 709
Hpy188III TCNNGA 3 cut(s) 106, 514, 1071
Hpy8I GTNNAC 3 cut(s) 251, 267, 979
HpyAV CCTTC 3 cut(s) 414, 684, 1077
HpyCH4III ACNGT 2 cut(s) 559, 754
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 327, 880, 895
HpyF10VI GCNNNNNNNGC 7 cut(s) 317, 333, 337, 342, 346, 839, 962
HpyF3I CTNAG 3 cut(s) 194, 497, 1017
HpySE526I ACGT 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 3 cut(s) 59, 331, 1027
HspAI GCGC 2 cut(s) 149, 671
KasI GGCGCC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 685
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 5 cut(s) 143, 216, 307, 475, 968
LweI GCATC 2 cut(s) 658, 952
MaeI CTAG 6 cut(s) 185, 219, 362, 602, 989, 1088
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 4 cut(s) 35, 91, 559, 1091
MalI GATC 1 cut(s) 687
MboI GATC 1 cut(s) 685
MboII GAAGA 4 cut(s) 372, 447, 609, 860
MhlI GDGCHC 2 cut(s) 67, 442
MluCI AATT 5 cut(s) 116, 479, 619, 741, 1037
Mly113I GGCGCC 1 cut(s) 149
MlyI GAGTC 2 cut(s) 284, 359
MmeI TCCRAC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 1037
MseI TTAA 3 cut(s) 266, 756, 999
MslI CAYNNNNRTG 3 cut(s) 219, 591, 971
MspA1I CMGCKG 2 cut(s) 916, 959
MspI CCGG 3 cut(s) 33, 68, 969
MspR9I CCNGG 1 cut(s) 904
MvaI CCWGG 1 cut(s) 904
MwoI GCNNNNNNNGC 7 cut(s) 317, 333, 337, 342, 346, 839, 962
NarI GGCGCC 1 cut(s) 149
NdeI CATATG 2 cut(s) 166, 807
NdeII GATC 1 cut(s) 685
NlaIII CATG 3 cut(s) 59, 331, 1027
NlaIV GGNNCC 4 cut(s) 66, 150, 440, 441
NmuCI GTSAC 3 cut(s) 35, 91, 559
NspI RCATGY 2 cut(s) 331, 1027
OliI CACNNNNGTG 2 cut(s) 219, 971
PaeI GCATGC 1 cut(s) 331
PaeR7I CTCGAG 3 cut(s) 106, 272, 413
PdmI GAANNNNTTC 1 cut(s) 1037
PfeI GAWTC 2 cut(s) 43, 736
PinAI ACCGGT 1 cut(s) 968
PkrI GCNGC 7 cut(s) 52, 158, 231, 322, 490, 915, 958
PleI GAGTC 2 cut(s) 283, 359
PluTI GGCGCC 1 cut(s) 152
PpsI GAGTC 2 cut(s) 283, 359
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 4 cut(s) 66, 150, 440, 441
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 5 cut(s) 52, 299, 438, 439, 827
PspXI VCTCGAGB 2 cut(s) 272, 413
PvuII CAGCTG 1 cut(s) 959
RseI CAYNNNNRTG 3 cut(s) 219, 591, 971
SaqAI TTAA 3 cut(s) 266, 756, 999
SatI GCNGC 7 cut(s) 51, 157, 230, 321, 489, 914, 957
Sau3AI GATC 1 cut(s) 685
Sau96I GGNCC 5 cut(s) 52, 299, 438, 439, 827
SchI GAGTC 2 cut(s) 284, 359
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 2 cut(s) 67, 442
SfaNI GCATC 2 cut(s) 658, 952
SfoI GGCGCC 1 cut(s) 150
Sfr274I CTCGAG 3 cut(s) 106, 272, 413
SgrAI CRCCGGYG 1 cut(s) 968
SlaI CTCGAG 3 cut(s) 106, 272, 413
SmiMI CAYNNNNRTG 3 cut(s) 219, 591, 971
SmlI CTYRAG 4 cut(s) 106, 134, 272, 413
SmoI CTYRAG 4 cut(s) 106, 134, 272, 413
SpeI ACTAGT 1 cut(s) 601
SphI GCATGC 1 cut(s) 331
Sse9I AATT 5 cut(s) 116, 479, 619, 741, 1037
SsiI CCGC 2 cut(s) 50, 914
SspDI GGCGCC 1 cut(s) 148
SspI AATATT 2 cut(s) 948, 1045
SspMI CTAG 6 cut(s) 185, 219, 362, 602, 989, 1088
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 2 cut(s) 384, 1087
TaaI ACNGT 2 cut(s) 559, 754
TaiI ACGT 1 cut(s) 104
TaqI TCGA 6 cut(s) 107, 260, 273, 407, 414, 677
TasI AATT 5 cut(s) 116, 479, 619, 741, 1037
TauI GCSGC 2 cut(s) 53, 916
TfiI GAWTC 2 cut(s) 43, 736
Tru1I TTAA 3 cut(s) 266, 756, 999
Tru9I TTAA 3 cut(s) 266, 756, 999
TseFI GTSAC 3 cut(s) 35, 91, 559
TseI GCWGC 5 cut(s) 156, 229, 320, 488, 956
Tsp45I GTSAC 3 cut(s) 35, 91, 559
TspDTI ATGAA 3 cut(s) 741, 801, 923
TspGWI ACGGA 3 cut(s) 110, 130, 1040
XapI RAATTY 4 cut(s) 116, 479, 619, 1037
XceI RCATGY 2 cut(s) 331, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XhoI CTCGAG 3 cut(s) 106, 272, 413
XmaJI CCTAGG 1 cut(s) 1087
XmnI GAANNNNTTC 1 cut(s) 1037
XspI CTAG 6 cut(s) 185, 219, 362, 602, 989, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.