Rmu_sc0030690.1_g000001

DNA-directed RNA polymerase III subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030690.1
OG0000459
Physical Location & Seq
Forward (+)
1 .. 1194
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030690.1_g000001.1.cds

Sequence Viewer

Length: 632 bp
ccctaagttacgtcgccggccacgattcgaagccagcaatccgttacccaatttgccggaatctccgaccgtcacaagcccctgaaatggcgtttagagggcgtggaggcggtttcggaggctatcaatgtcatggtaaagaagaaccctttgtgctgttccctgatattaacctacctgatgccacagatgttttgtccatctccgatcagaagaaaaacaaggaagagatgttgttgatcaaagaaagtttggagtggctgaacaaaacagggtattatcttgaacagactgacaaagacaagcagcgaaagggtaacagagaaatccattctttctcgcagtacttagtgccgagtatgtttcctggagaactgactagaggttcgaatgtgagggggttaagcagggacaaagttgcgtgggacagaaagaagaaggaagagatcgactggaatcggattgagaagatggaacaggacagtgatgccaagcaaaagaaaaaacgcgaaaaggatgaggaagatgtgggtgtacaactgaatcacatgcagtggatacctgcacgtgaggcaacgagtacctccagcagcaacaggagggctagggctactagggtggttgccatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
RNA_pol_3_Rpc31

Protein Analysis

209

Amino Acids

24.08

Weight (kDa)

9.22

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 570
AccII CGCG 1 cut(s) 509
AciI CCGC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 18
AcvI CACGTG 1 cut(s) 568
AfaI GTAC 3 cut(s) 346, 536, 582
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 366
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 306, 590
ArsI GACNNNNNNTTYG 2 cut(s) 369, 401
AsuII TTCGAA 2 cut(s) 28, 388
BbrPI CACGTG 1 cut(s) 568
BbvI GCAGC 2 cut(s) 318, 602
BccI CCATC 2 cut(s) 208, 465
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 1 cut(s) 551
BclI TGATCA 1 cut(s) 239
BfaI CTAG 3 cut(s) 380, 605, 614
BfuAI ACCTGC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 551
BisI GCNGC 2 cut(s) 307, 591
BlsI GCNGC 2 cut(s) 308, 592
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 171, 477
BpmI CTGGAG 2 cut(s) 389, 570
Bpu14I TTCGAA 2 cut(s) 28, 388
BsaAI YACGTR 1 cut(s) 568
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 2 cut(s) 318, 602
BsgI GTGCAG 1 cut(s) 548
Bsh1236I CGCG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 17, 57
BslFI GGGAC 2 cut(s) 424, 439
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 2 cut(s) 424, 439
BsnI GGCC 1 cut(s) 20
Bsp119I TTCGAA 2 cut(s) 28, 388
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 3 cut(s) 207, 239, 446
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 20
BspFNI CGCG 1 cut(s) 509
BspMI ACCTGC 1 cut(s) 570
BspT104I TTCGAA 2 cut(s) 28, 388
BsrFI RCCGGY 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 16
BssMI GATC 3 cut(s) 207, 239, 446
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 71, 484
Bst6I CTCTTC 2 cut(s) 221, 437
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 568
BstBI TTCGAA 2 cut(s) 28, 388
BstC8I GCNNGC 2 cut(s) 18, 35
BstDEI CTNAG 2 cut(s) 4, 348
BstF5I GGATG 1 cut(s) 522
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 3 cut(s) 210, 242, 449
BstMBI GATC 3 cut(s) 207, 239, 446
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 366
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 318, 602
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 489, 559
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 18, 35
Cfr10I RCCGGY 1 cut(s) 16
Csp6I GTAC 3 cut(s) 345, 535, 581
CviAII CATG 2 cut(s) 133, 549
CviJI RGCY 7 cut(s) 20, 33, 79, 122, 261, 604, 610
CviKI_1 RGCY 7 cut(s) 20, 33, 79, 122, 261, 604, 610
CviQI GTAC 3 cut(s) 345, 535, 581
DdeI CTNAG 2 cut(s) 4, 348
DpnI GATC 3 cut(s) 209, 241, 448
DpnII GATC 3 cut(s) 207, 239, 446
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 221, 437
EarI CTCTTC 2 cut(s) 221, 437
Eco72I CACGTG 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 136, 552
FaiI YATR 3 cut(s) 134, 361, 550
FaqI GGGAC 2 cut(s) 424, 439
FatI CATG 2 cut(s) 132, 548
FbaI TGATCA 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 307, 591
FokI GGATG 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 307, 591
FspBI CTAG 3 cut(s) 380, 605, 614
GluI GCNGC 2 cut(s) 307, 591
GsuI CTGGAG 2 cut(s) 389, 570
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 17, 57
Hin1II CATG 2 cut(s) 136, 552
HinfI GANTC 4 cut(s) 25, 60, 456, 543
HpaII CCGG 2 cut(s) 17, 57
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 5 cut(s) 67, 118, 207, 212, 461
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 535
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 2 cut(s) 71, 484
HpyCH4IV ACGT 2 cut(s) 11, 567
HpyCH4V TGCA 2 cut(s) 552, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 2 cut(s) 4, 348
HpySE526I ACGT 2 cut(s) 11, 567
Hsp92II CATG 2 cut(s) 136, 552
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 239
Kzo9I GATC 3 cut(s) 207, 239, 446
Lsp1109I GCAGC 2 cut(s) 318, 602
LweI GCATC 2 cut(s) 171, 477
MaeI CTAG 3 cut(s) 380, 605, 614
MaeII ACGT 2 cut(s) 11, 567
MaeIII GTNAC 4 cut(s) 7, 43, 71, 316
MalI GATC 3 cut(s) 209, 241, 448
MboI GATC 3 cut(s) 207, 239, 446
MboII GAAGA 7 cut(s) 154, 225, 238, 447, 454, 480, 535
MluCI AATT 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 9 cut(s) 91, 100, 112, 376, 389, 513, 564, 593, 594
MroNI GCCGGC 1 cut(s) 16
MseI TTAA 3 cut(s) 170, 403, 630
MspI CCGG 2 cut(s) 17, 57
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 571
NaeI GCCGGC 1 cut(s) 18
NdeII GATC 3 cut(s) 207, 239, 446
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 136, 552
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 552
NspV TTCGAA 2 cut(s) 28, 388
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 4 cut(s) 25, 60, 456, 543
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 2 cut(s) 308, 592
PmaCI CACGTG 1 cut(s) 568
PmlI CACGTG 1 cut(s) 568
Ppu21I YACGTR 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 366
PspCI CACGTG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 366
RsaI GTAC 3 cut(s) 346, 536, 582
RsaNI GTAC 3 cut(s) 345, 535, 581
SaqAI TTAA 3 cut(s) 170, 403, 630
SatI GCNGC 2 cut(s) 307, 591
Sau3AI GATC 3 cut(s) 207, 239, 446
ScaI AGTACT 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 368
SetI ASST 7 cut(s) 14, 176, 180, 387, 564, 570, 586
SfaNI GCATC 2 cut(s) 171, 477
SfuI TTCGAA 2 cut(s) 28, 388
Sse9I AATT 1 cut(s) 50
SsiI CCGC 1 cut(s) 110
SspMI CTAG 3 cut(s) 380, 605, 614
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 71, 484
TaiI ACGT 2 cut(s) 14, 570
TaqI TCGA 3 cut(s) 28, 388, 449
TasI AATT 1 cut(s) 50
TatI WGTACW 2 cut(s) 344, 534
TfiI GAWTC 4 cut(s) 25, 60, 456, 543
Tru1I TTAA 3 cut(s) 170, 403, 630
Tru9I TTAA 3 cut(s) 170, 403, 630
TscAI CASTG 2 cut(s) 489, 559
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 306, 590
Tsp45I GTSAC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 489, 559
XceI RCATGY 1 cut(s) 552
XspI CTAG 3 cut(s) 380, 605, 614
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.