Rroxscaffold_5G00364400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000459
Physical Location & Seq
Reverse (-)
45637566 .. 45640570
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364400.1

Sequence Viewer

Length: 654 bp
ATGCAGAAATCGTCGAGAGGATTTCGTTTCGTACCTCAGACAACCCAGACGGTGGCCGGAGTCGCCGGAAAGTCAGAAATTGTCGGAAGAGCTTCGCACCTTCTGAGCTTCGAATCTCCCTTCACGAACCGTGCATGGATGATCCATCACCATAGACACGTCGGCGATCACGAGACAAGAAGAATGCAGGTGGTCCGACGTGGAGAGGTGGCCGGACGGAGGAGTTTTGTCCGGGTCGTGGCTTCGGGTCGTCGAGGAGCAGAAACGGGTCGAGAGCTCTGTCCTTTCTGGAATGGGAAGTCCGCCGCGGCGGGAATGGTCGGGATTGGTTTTGAGGCAGGACAGCACCACGTCTGGGTTTGGTGGTTGGCTGTTGATGGGGATGTTTTGTCCATCTCCGATCAGAAGAAAGACAAGGAAGAGATGTTGTTGATCAAAGAAAGTTTGGAGTGGCTGAACAAAACAGGGTATTATCTTGAACAGACTGACAAAGACAAGCAGCGAAAGGGTAACAGAGAAATCCATTCTTTCTCGCAGTACTTAGTGCCGAGTATGTTTCCTGGAGAACTGACTAGAGCTCTGCAGTTCCTTGCGAGACCAAACTACTTCCTGAACCACACAATAGAACTTGAATGTGCAGCTTCCAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.71

Weight (kDa)

9.69

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 52
AccII CGCG 1 cut(s) 308
AciI CCGC 4 cut(s) 303, 306, 308, 311
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 2 cut(s) 54, 210
AfaI GTAC 2 cut(s) 33, 539
AfiI CCNNNNNNNGG 4 cut(s) 52, 219, 238, 355
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 2 cut(s) 479, 632
AjiI CACGTC 3 cut(s) 160, 200, 352
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 5 cut(s) 92, 108, 277, 578, 641
AluI AGCT 5 cut(s) 92, 108, 277, 578, 641
Alw21I GWGCWC 2 cut(s) 279, 580
Alw26I GTCTC 2 cut(s) 167, 589
AlwI GGATC 1 cut(s) 136
AoxI GGCC 2 cut(s) 54, 210
ApeKI GCWGC 2 cut(s) 499, 638
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 193
BanII GRGCYC 2 cut(s) 279, 580
BauI CACGAG 1 cut(s) 170
Bbv12I GWGCWC 2 cut(s) 279, 580
BbvI GCAGC 2 cut(s) 511, 650
BccI CCATC 3 cut(s) 153, 371, 401
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 167, 589
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 4 cut(s) 306, 309, 500, 639
BlsI GCNGC 4 cut(s) 307, 310, 501, 640
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 2 cut(s) 233, 561
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 3 cut(s) 160, 200, 352
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 2 cut(s) 233, 561
BpmI CTGGAG 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 219, 238, 355
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 144, 388
BseLI CCNNNNNNNGG 4 cut(s) 52, 219, 238, 355
BseMII CTCAG 2 cut(s) 50, 95
BseRI GAGGAG 2 cut(s) 235, 270
BseXI GCAGC 2 cut(s) 511, 650
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 56, 212
BsiHKAI GWGCWC 2 cut(s) 279, 580
BsiSI CCGG 4 cut(s) 57, 66, 213, 232
BslI CCNNNNNNNGG 4 cut(s) 52, 219, 238, 355
BsmAI GTCTC 2 cut(s) 167, 589
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 2 cut(s) 56, 212
Bso31I GGTCTC 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 279, 580
Bsp143I GATC 4 cut(s) 141, 166, 400, 432
BspACI CCGC 4 cut(s) 303, 306, 308, 311
BspANI GGCC 2 cut(s) 56, 212
BspCNI CTCAG 2 cut(s) 49, 96
BspFNI CGCG 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 589
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 4 cut(s) 141, 166, 400, 432
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 2 cut(s) 52, 131
Bst6I CTCTTC 2 cut(s) 82, 414
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 36, 104, 541
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 144, 388
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 4 cut(s) 144, 169, 403, 435
BstMAI GTCTC 2 cut(s) 167, 589
BstMBI GATC 4 cut(s) 141, 166, 400, 432
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 231, 559
BstSFI CTRYAG 1 cut(s) 581
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 511, 650
BsuRI GGCC 2 cut(s) 56, 212
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 3 cut(s) 160, 200, 352
BtsCI GGATG 2 cut(s) 144, 388
BveI ACCTGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 309
Csp6I GTAC 2 cut(s) 32, 538
CviAII CATG 1 cut(s) 135
CviQI GTAC 2 cut(s) 32, 538
DdeI CTNAG 3 cut(s) 36, 104, 541
DpnI GATC 4 cut(s) 143, 168, 402, 434
DpnII GATC 4 cut(s) 141, 166, 400, 432
EaeI YGGCCR 2 cut(s) 54, 210
Eam1104I CTCTTC 2 cut(s) 82, 414
EarI CTCTTC 2 cut(s) 82, 414
EciI GGCGGA 1 cut(s) 292
Ecl136II GAGCTC 2 cut(s) 277, 578
Eco24I GRGCYC 2 cut(s) 279, 580
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 193
Eco53kI GAGCTC 2 cut(s) 277, 578
EcoICRI GAGCTC 2 cut(s) 277, 578
EcoRII CCWGG 1 cut(s) 559
EcoT38I GRGCYC 2 cut(s) 279, 580
FaeI CATG 1 cut(s) 138
FaiI YATR 3 cut(s) 136, 153, 554
FatI CATG 1 cut(s) 134
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 306, 309, 500, 639
FokI GGATG 2 cut(s) 151, 395
FriOI GRGCYC 2 cut(s) 279, 580
Fsp4HI GCNGC 4 cut(s) 306, 309, 500, 639
FspBI CTAG 1 cut(s) 573
GluI GCNGC 4 cut(s) 306, 309, 500, 639
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 2 cut(s) 56, 212
HapII CCGG 4 cut(s) 57, 66, 213, 232
Hin1II CATG 1 cut(s) 138
HinfI GANTC 2 cut(s) 60, 113
HpaII CCGG 4 cut(s) 57, 66, 213, 232
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 7 cut(s) 39, 76, 86, 105, 197, 400, 405
Hpy188III TCNNGA 8 cut(s) 15, 124, 170, 272, 289, 322, 476, 610
Hpy99I CGWCG 4 cut(s) 16, 164, 201, 255
HpyAV CCTTC 2 cut(s) 110, 130
HpyCH4III ACNGT 2 cut(s) 52, 131
HpyCH4IV ACGT 3 cut(s) 159, 199, 351
HpyCH4V TGCA 5 cut(s) 4, 134, 187, 583, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 36, 104, 541
HpySE526I ACGT 3 cut(s) 159, 199, 351
Hsp92II CATG 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 432
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 4 cut(s) 141, 166, 400, 432
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 2 cut(s) 511, 650
MaeI CTAG 1 cut(s) 573
MaeII ACGT 3 cut(s) 159, 199, 351
MaeIII GTNAC 1 cut(s) 509
MalI GATC 4 cut(s) 143, 168, 402, 434
MboI GATC 4 cut(s) 141, 166, 400, 432
MboII GAAGA 4 cut(s) 99, 192, 418, 431
MhlI GDGCHC 2 cut(s) 279, 580
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 64, 220
MnlI CCTC 6 cut(s) 11, 45, 199, 213, 248, 328
MroXI GAANNNNTTC 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 4 cut(s) 57, 66, 213, 232
MspR9I CCNGG 2 cut(s) 233, 561
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 233
NdeII GATC 4 cut(s) 141, 166, 400, 432
NlaIII CATG 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 573
NspV TTCGAA 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 4 cut(s) 307, 310, 501, 640
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp124BI GAGCTC 2 cut(s) 279, 580
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspPI GGNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 585
RsaI GTAC 2 cut(s) 33, 539
RsaNI GTAC 2 cut(s) 32, 538
SacI GAGCTC 2 cut(s) 279, 580
SacII CCGCGG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 82
SatI GCNGC 4 cut(s) 306, 309, 500, 639
Sau3AI GATC 4 cut(s) 141, 166, 400, 432
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 233, 561
SduI GDGCHC 2 cut(s) 279, 580
SfcI CTRYAG 1 cut(s) 581
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 1 cut(s) 193
Sse9I AATT 1 cut(s) 78
SsiI CCGC 4 cut(s) 303, 306, 308, 311
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 2 cut(s) 279, 580
StyD4I CCNGG 2 cut(s) 231, 559
TaaI ACNGT 2 cut(s) 52, 131
TaiI ACGT 3 cut(s) 162, 202, 354
TaqI TCGA 4 cut(s) 14, 111, 253, 271
TasI AATT 1 cut(s) 78
TatI WGTACW 1 cut(s) 537
TauI GCSGC 2 cut(s) 308, 311
TfiI GAWTC 1 cut(s) 113
TseI GCWGC 2 cut(s) 499, 638
TspGWI ACGGA 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.