Rw5G047080

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
81556922 .. 81558215
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047080.1

Sequence Viewer

Length: 528 bp
ATGGCTCTTCGTTCTGTGCTTGGAAAGATGGCGAGTACTATGACTAGTAGTAAATGTATTCACAAAAATGGACGTCTAGTTTTGAGGATTGGGAGATTTGAAGCTATCAACCACAACCCCAATCACAGTAACAAAAATAAGGATGCGCCTTCGATGGATGATCGTCTTACTTCTTATCTGTTTGAAATGGGGTGTTATGATGAAAATGGGGGGATTGATTATCATATGGATTTAGGGGGAATAGGACCTGCCCGTTTTGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCATAGATGTATGTATGAACTAATATTGGATGCAGTTGATGCCGCTGGTGTGGTGAACTTTTACCTAGCATATGTTGAGATAGATGATATAAATGAGGGCATATGGTTGGAAGAATTCAATATTTTCCGTGATAATGGATACCCTGCAAGACTATATCATCACCTAGACAACTTCTTTGTTGAATGA

Protein Analysis

175

Amino Acids

20.34

Weight (kDa)

6.44

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 256
AciI CCGC 2 cut(s) 332, 384
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 5 cut(s) 101, 185, 274, 460, 524
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 1 cut(s) 500
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 406, 494
AvaII GGWCC 1 cut(s) 245
BccI CCATC 2 cut(s) 22, 148
BciT130I CCWGG 1 cut(s) 322
BciVI GTATCC 1 cut(s) 473
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 4 cut(s) 45, 77, 407, 506
BfuAI ACCTGC 1 cut(s) 256
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 2 cut(s) 332, 384
BlsI GCNGC 2 cut(s) 333, 385
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 133, 361, 370
BsaHI GRCGYC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 322
BseGI GGATG 4 cut(s) 148, 163, 330, 376
BsgI GTGCAG 1 cut(s) 332
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 332, 384
BspMI ACCTGC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 12
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 12, 261
BstACI GRCGYC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 380
BstF5I GGATG 4 cut(s) 148, 163, 330, 376
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 257, 380
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BsuI GTATCC 1 cut(s) 473
BtsCI GGATG 4 cut(s) 148, 163, 330, 376
BveI ACCTGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 36
CviJI RGCY 3 cut(s) 5, 104, 331
CviKI_1 RGCY 3 cut(s) 5, 104, 331
CviQI GTAC 1 cut(s) 36
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 12, 261
EarI CTCTTC 2 cut(s) 12, 261
Eco47I GGWCC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 320
FauNDI CATATG 3 cut(s) 225, 412, 443
Fnu4HI GCNGC 2 cut(s) 332, 384
FokI GGATG 4 cut(s) 155, 170, 337, 383
Fsp4HI GCNGC 2 cut(s) 332, 384
FspBI CTAG 4 cut(s) 45, 77, 407, 506
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 332, 384
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HphI GGTGA 2 cut(s) 406, 494
Hpy166II GTNNAC 1 cut(s) 397
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 4 cut(s) 298, 313, 374, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 380
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 73
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 5 cut(s) 261, 307, 334, 372, 498
LweI GCATC 3 cut(s) 133, 361, 370
MaeI CTAG 4 cut(s) 45, 77, 407, 506
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 278, 464
MluCI AATT 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 2 cut(s) 78, 430
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 2 cut(s) 334, 386
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 257, 380
NdeI CATATG 3 cut(s) 225, 412, 443
NdeII GATC 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 333, 385
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 12
SatI GCNGC 2 cut(s) 332, 384
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 322
SetI ASST 6 cut(s) 76, 106, 250, 323, 408, 507
SfaNI GCATC 3 cut(s) 133, 361, 370
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 66
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 1 cut(s) 455
SsiI CCGC 2 cut(s) 332, 384
SspI AATATT 2 cut(s) 366, 463
SspMI CTAG 4 cut(s) 45, 77, 407, 506
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 455
TatI WGTACW 1 cut(s) 35
TauI GCSGC 2 cut(s) 334, 386
TspDTI ATGAA 3 cut(s) 216, 341, 372
TspGWI ACGGA 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 455
XspI CTAG 4 cut(s) 45, 77, 407, 506
ZraI GACGTC 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.