Rh1CG244000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000459
Physical Location & Seq
Reverse (-)
50501527 .. 50501874
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG244000.1

Sequence Viewer

Length: 348 bp
ATGGTGGTGGTAGACACATCGTGCTCCGTCACAGGCAAACTAGATCCGGCAGCCGGCAGTTGGTTCAATCTGATTTTGCAGGTCCACATCCATGCACGGGTGAAAGCCTCTTATCGTGGTGGTGTGGTTTGCGATTTGGATGGCGGGATTGGAGGTTTGAAGGATCTTCAACGGGTTGGAGAGTTGGGATGGAATTGGGTTGCGGGGATGACGAGTTTAGGTGGGTGTTGGCCATGGTTGCTACGTACTTGGATCCGATCGCTCCAAAGATGGTATGGTGTGTTTTTTGGGAGGCGGAGTTGGAGGTGGGTTGCGGCTTTGGCTAGCACGCGGGTAGCAGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

10.19

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 331
AciI CCGC 5 cut(s) 144, 203, 295, 314, 331
AclWI GGATC 4 cut(s) 38, 171, 247, 260
AcoI YGGCCR 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 3 cut(s) 53, 60, 97
AgsI TTSAA 3 cut(s) 67, 160, 170
Alw21I GWGCWC 1 cut(s) 26
AlwI GGATC 4 cut(s) 38, 171, 247, 260
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 112
AsuNHI GCTAGC 1 cut(s) 323
AvaII GGWCC 1 cut(s) 82
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 134, 183, 264
BfaI CTAG 2 cut(s) 41, 324
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 51, 315
BlsI GCNGC 2 cut(s) 52, 316
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 254
BmtI GCTAGC 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 60, 97
Bse118I RCCGGY 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 4 cut(s) 87, 145, 194, 213
BseLI CCNNNNNNNGG 3 cut(s) 53, 60, 97
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 47, 54
BslI CCNNNNNNNGG 3 cut(s) 53, 60, 97
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 43, 163, 252, 257
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 5 cut(s) 144, 203, 295, 314, 331
BspANI GGCC 1 cut(s) 232
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 70
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 4 cut(s) 38, 171, 247, 260
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 4 cut(s) 43, 163, 252, 257
BssT1I CCWWGG 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 55, 325, 329
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 4 cut(s) 87, 145, 194, 213
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 4 cut(s) 46, 166, 255, 260
BstMBI GATC 4 cut(s) 43, 163, 252, 257
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 238, 320
BstSNI TACGTA 1 cut(s) 245
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 3 cut(s) 43, 163, 252
BstYI RGATCY 3 cut(s) 43, 163, 252
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 4 cut(s) 87, 145, 194, 213
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 55, 325, 329
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 92, 234
CviJI RGCY 5 cut(s) 53, 107, 232, 317, 323
CviKI_1 RGCY 5 cut(s) 53, 107, 232, 317, 323
CviQI GTAC 1 cut(s) 246
DpnI GATC 4 cut(s) 45, 165, 254, 259
DpnII GATC 4 cut(s) 43, 163, 252, 257
DraIII CACNNNGTG 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 230
EciI GGCGGA 1 cut(s) 310
Eco105I TACGTA 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 95, 237
FaiI YATR 3 cut(s) 93, 235, 276
FatI CATG 2 cut(s) 91, 233
FauI CCCGC 3 cut(s) 137, 196, 324
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 51, 315
FokI GGATG 4 cut(s) 74, 152, 201, 220
Fsp4HI GCNGC 2 cut(s) 51, 315
FspBI CTAG 2 cut(s) 41, 324
GluI GCNGC 2 cut(s) 51, 315
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 47, 54
Hin1II CATG 2 cut(s) 95, 237
HpaII CCGG 2 cut(s) 47, 54
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 13, 85
Hpy188I TCNGA 2 cut(s) 72, 257
Hpy8I GTNNAC 2 cut(s) 13, 85
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 79, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 320
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 2 cut(s) 95, 237
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 43, 163, 252, 257
LmnI GCTCC 2 cut(s) 29, 267
LpnPI CCDG 4 cut(s) 18, 60, 65, 67
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 2 cut(s) 41, 324
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 28
MalI GATC 4 cut(s) 45, 165, 254, 259
MboI GATC 4 cut(s) 43, 163, 252, 257
MboII GAAGA 1 cut(s) 158
MflI RGATCY 3 cut(s) 43, 163, 252
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 1 cut(s) 193
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 157, 281
MnlI CCTC 4 cut(s) 118, 146, 285, 297
Mox20I TGGCCA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 53
MscI TGGCCA 1 cut(s) 232
MslI CAYNNNNRTG 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 2 cut(s) 47, 54
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 238, 320
NaeI GCCGGC 1 cut(s) 55
NcoI CCATGG 1 cut(s) 233
NdeII GATC 4 cut(s) 43, 163, 252, 257
NgoMIV GCCGGC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 2 cut(s) 95, 237
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 52, 316
Ple19I CGATCG 1 cut(s) 260
Ppu21I YACGTR 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 3 cut(s) 43, 163, 252
PvuI CGATCG 1 cut(s) 260
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 2 cut(s) 51, 315
Sau3AI GATC 4 cut(s) 43, 163, 252, 257
Sau96I GGNCC 1 cut(s) 82
SduI GDGCHC 1 cut(s) 26
SetI ASST 5 cut(s) 84, 157, 223, 247, 308
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 90
SnaBI TACGTA 1 cut(s) 245
Sse9I AATT 1 cut(s) 193
SsiI CCGC 5 cut(s) 144, 203, 295, 314, 331
SspMI CTAG 2 cut(s) 41, 324
StyI CCWWGG 1 cut(s) 233
TaiI ACGT 1 cut(s) 247
TasI AATT 1 cut(s) 193
TauI GCSGC 1 cut(s) 317
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 2 cut(s) 41, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.