Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003323.1

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

156074 .. 157923

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003323.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggttactttgctagcggctggcgcctttgtcgacgttgtggcactgagcgcacttggtcctgaagatcttctctccagccttggcacctcccgatattggatcagtggtaataccgagactatggctcttcgttctgtgcttggaaagatggggagtactatgactatggctagtaataaatgtgttcacaaaaatggacgtctagttttgaggattgggagttttgaagctatcaaccacaacccgaatcacagtaacaataataaggatgcaccttcgatggatgaccgtcttactgcttatctgtttgaaatggggtgttatgatgaaaatatgtatcccgtgactctcttattatttgaacaggggattgattatcatatggatttagggggaataggacctgcccgttttgctgtggaagaattcaacaagcgaaagaaaacccaactgcaacttgtgagagtgcagagaacctggatgaagccgctgtatcatcatagatgtatgtatgaactaatattggatgcagttgatgccgctggtgtggtgaacttttacctagcatatgttgagatagatgatataaatgagggcatgtggttggaagaattcaatattttccgtgataatggataccctgcaagactatatcatcacctaggtaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

224

Amino Acids

25.36

Weight (kDa)

5.73

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	2 cut(s)	23, 86
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	3 cut(s)	17, 491, 543
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	428, 614
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	2 cut(s)	24, 202
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	230, 314, 365, 433, 619
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	428, 614
Asp700I	GAANNNNTTC	1 cut(s)	69
AspA2I	CCTAGG	1 cut(s)	664
AspLEI	GCGC	2 cut(s)	26, 53
AspS9I	GGNCC	2 cut(s)	59, 404
AsuHPI	GGTGA	2 cut(s)	565, 653
AsuNHI	GCTAGC	1 cut(s)	13
AvaII	GGWCC	2 cut(s)	59, 404
AvrII	CCTAGG	1 cut(s)	664
BanI	GGYRCC	2 cut(s)	23, 86
BccI	CCATC	2 cut(s)	145, 277
BciT130I	CCWGG	1 cut(s)	481
BciVI	GTATCC	2 cut(s)	351, 632
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	5 cut(s)	14, 174, 206, 566, 665
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	2 cut(s)	351, 632
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	3 cut(s)	18, 491, 543
BlnI	CCTAGG	1 cut(s)	664
BlsI	GCNGC	3 cut(s)	19, 492, 544
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	2 cut(s)	59, 404
BmgT120I	GGNCC	2 cut(s)	59, 404
BmiI	GGNNCC	2 cut(s)	25, 88
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	262, 520, 529
BmtI	GCTAGC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	61
BsaHI	GRCGYC	2 cut(s)	24, 202
BsaJI	CCNNGG	2 cut(s)	82, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	2 cut(s)	82, 664
BseGI	GGATG	4 cut(s)	277, 292, 489, 535
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	491
BshNI	GGYRCC	2 cut(s)	23, 86
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	67, 102
BspACI	CCGC	3 cut(s)	17, 491, 543
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	25, 88
BspMI	ACCTGC	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	23, 86
BssECI	CCNNGG	2 cut(s)	82, 664
BssMI	GATC	2 cut(s)	67, 102
BssNI	GRCGYC	2 cut(s)	24, 202
BssT1I	CCWWGG	2 cut(s)	82, 664
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	2 cut(s)	257, 293
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	2 cut(s)	24, 202
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	15, 22
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	277, 292, 489, 535
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 53
BstKTI	GATC	2 cut(s)	70, 105
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	67, 102
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 50, 416, 539
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuI	GTATCC	2 cut(s)	351, 632
BtsCI	GGATG	4 cut(s)	277, 292, 489, 535
BtsIMutI	CAGTG	2 cut(s)	44, 112
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	15, 22
CfoI	GCGC	2 cut(s)	26, 53
Cfr13I	GGNCC	2 cut(s)	59, 404
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	601
CviJI	RGCY	6 cut(s)	20, 81, 128, 173, 233, 490
CviKI_1	RGCY	6 cut(s)	20, 81, 128, 173, 233, 490
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	47
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	2 cut(s)	69, 104
DpnII	GATC	2 cut(s)	67, 102
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	82, 664
Eco47I	GGWCC	2 cut(s)	59, 404
Eco57I	CTGAAG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRI	GAATTC	2 cut(s)	428, 614
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	2 cut(s)	82, 664
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	82, 664
FaeI	CATG	1 cut(s)	604
FatI	CATG	1 cut(s)	600
FauNDI	CATATG	2 cut(s)	384, 571
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	18, 491, 543
FokI	GGATG	4 cut(s)	284, 299, 496, 542
Fsp4HI	GCNGC	3 cut(s)	18, 491, 543
FspBI	CTAG	5 cut(s)	14, 174, 206, 566, 665
GlaI	GCGC	2 cut(s)	25, 52
GluI	GCNGC	3 cut(s)	18, 491, 543
GsuI	CTGGAG	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	27
HhaI	GCGC	2 cut(s)	26, 53
Hin1I	GRCGYC	2 cut(s)	24, 202
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	2 cut(s)	24, 51
HinP1I	GCGC	2 cut(s)	24, 51
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	250, 349
HphI	GGTGA	2 cut(s)	565, 653
Hpy166II	GTNNAC	3 cut(s)	34, 190, 556
Hpy188III	TCNNGA	2 cut(s)	62, 93
Hpy8I	GTNNAC	3 cut(s)	34, 190, 556
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	257, 293
HpyCH4IV	ACGT	2 cut(s)	36, 202
HpyCH4V	TGCA	5 cut(s)	275, 457, 472, 533, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 50, 416, 539
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	36, 202
Hsp92I	GRCGYC	2 cut(s)	24, 202
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	2 cut(s)	24, 51
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	67, 102
LguI	GCTCTTC	1 cut(s)	135
LpnPI	CCDG	9 cut(s)	6, 75, 91, 353, 420, 466, 493, 531, 657
LweI	GCATC	3 cut(s)	262, 520, 529
MaeI	CTAG	5 cut(s)	14, 174, 206, 566, 665
MaeII	ACGT	2 cut(s)	36, 202
MaeIII	GTNAC	3 cut(s)	4, 257, 346
MalI	GATC	2 cut(s)	69, 104
MboI	GATC	2 cut(s)	67, 102
MboII	GAAGA	5 cut(s)	62, 77, 122, 437, 623
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	3 cut(s)	428, 614, 670
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	3 cut(s)	100, 207, 589
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	673
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	493, 545
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	4 cut(s)	23, 50, 416, 539
NarI	GGCGCC	1 cut(s)	24
NdeI	CATATG	2 cut(s)	384, 571
NdeII	GATC	2 cut(s)	67, 102
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	2 cut(s)	25, 88
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	19, 492, 544
PleI	GAGTC	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	25, 88
PspPI	GGNCC	2 cut(s)	59, 404
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	673
SatI	GCNGC	3 cut(s)	18, 491, 543
Sau3AI	GATC	2 cut(s)	67, 102
Sau96I	GGNCC	2 cut(s)	59, 404
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	481
SfaNI	GCATC	3 cut(s)	262, 520, 529
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	2 cut(s)	59, 404
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	3 cut(s)	428, 614, 670
SsiI	CCGC	3 cut(s)	17, 491, 543
SspDI	GGCGCC	1 cut(s)	23
SspI	AATATT	2 cut(s)	525, 622
SspMI	CTAG	5 cut(s)	14, 174, 206, 566, 665
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	2 cut(s)	82, 664
TaaI	ACNGT	2 cut(s)	257, 293
TaiI	ACGT	2 cut(s)	39, 205
TaqI	TCGA	2 cut(s)	33, 281
TasI	AATT	3 cut(s)	428, 614, 670
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	3 cut(s)	20, 493, 545
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TscAI	CASTG	2 cut(s)	51, 112
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	345, 500, 531
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	2 cut(s)	51, 112
VpaK11BI	GGWCC	2 cut(s)	59, 404
XapI	RAATTY	2 cut(s)	428, 614
XceI	RCATGY	1 cut(s)	604
XmaJI	CCTAGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	5 cut(s)	14, 174, 206, 566, 665
ZraI	GACGTC	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.