Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

81590085 .. 81591397

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTTTTCGTTCTGTGCTTGGAAAGATGGGGAAAACTGTGACTATGACGAGTAGCAAATGTATTCACAAAAATGGAAGACTAGTTTTGAAGCTTGGGAATTTTGAGGCCGAAGCTATCAACCACAAAAACAATAACAATAATAAGGATGCGCCTTCGATGGATAATCCTCTTACTGCTTATCTCTCTGAAATGGGTTGTTATGATGAATATGGGATTCTAATTCCAATGACTGTTAATCGGGGGATTGATTATCATATGGATTTGGGGGGTATAGGGCCTGCCCATTTTGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCGTAAATGTATGTATAGACTAATATTGGATGCAGCTGATGCTACCGGTGTGGTGAACTTTTACCTAGTGTATGTTAAGATAGATGATTTGACTGAGGGCATGTGGTTGAAAGAATTCAATATTTTCCGTGATAGTGGATACCCTTCAAGACTATATCATCACCTAGACAACTTCTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

186

Amino Acids

21.49

Weight (kDa)

8.89

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	100, 488
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	6 cut(s)	91, 307, 484, 493, 522, 557
AhlI	ACTAGT	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	3 cut(s)	94, 116, 410
AluI	AGCT	3 cut(s)	94, 116, 410
AoxI	GGCC	2 cut(s)	108, 278
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	100, 488
ArsI	GACNNNNNNTTYG	1 cut(s)	533
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	439, 527
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	2 cut(s)	22, 154
BciT130I	CCWGG	1 cut(s)	355
BciVI	GTATCC	1 cut(s)	506
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 440, 539
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	365, 408
BlsI	GCNGC	2 cut(s)	366, 409
Bme1390I	CCNGG	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	139, 394, 403
BpiI	GAAGAC	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	419
Bse118I	RCCGGY	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	355
BseGI	GGATG	3 cut(s)	154, 363, 409
BseMII	CTCAG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	110, 280
BshTI	ACCGGT	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	420
BsnI	GGCC	2 cut(s)	110, 280
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	2 cut(s)	110, 280
BspCNI	CTCAG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	40, 235
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	154, 363, 409
BstHHI	GCGC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 413
BstNI	CCWGG	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	110, 280
BtsCI	GGATG	3 cut(s)	154, 363, 409
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	1 cut(s)	475
CviJI	RGCY	7 cut(s)	5, 94, 110, 116, 280, 364, 410
CviKI_1	RGCY	7 cut(s)	5, 94, 110, 116, 280, 364, 410
DdeI	CTNAG	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	353
FaeI	CATG	1 cut(s)	478
FatI	CATG	1 cut(s)	474
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	365, 408
FokI	GGATG	3 cut(s)	161, 370, 416
Fsp4HI	GCNGC	2 cut(s)	365, 408
FspBI	CTAG	3 cut(s)	83, 440, 539
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	365, 408
HaeIII	GGCC	2 cut(s)	110, 280
HapII	CCGG	1 cut(s)	420
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	2 cut(s)	439, 527
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	165, 528
HpyCH4III	ACNGT	2 cut(s)	40, 235
HpyCH4V	TGCA	3 cut(s)	331, 346, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 413
HpyF3I	CTNAG	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	478
HspAI	GCGC	1 cut(s)	152
LpnPI	CCDG	4 cut(s)	294, 340, 367, 433
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	3 cut(s)	139, 394, 403
MaeI	CTAG	3 cut(s)	83, 440, 539
MaeIII	GTNAC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	90, 311
MluCI	AATT	3 cut(s)	100, 222, 488
MnlI	CCTC	3 cut(s)	100, 180, 463
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	2 cut(s)	237, 450
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	367, 410
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	290, 413
NdeI	CATATG	1 cut(s)	258
NlaIII	CATG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	366, 409
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	237, 450
SatI	GCNGC	2 cut(s)	365, 408
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	6 cut(s)	96, 118, 356, 412, 441, 540
SfaNI	GCATC	3 cut(s)	139, 394, 403
SmiMI	CAYNNNNRTG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	3 cut(s)	100, 222, 488
SsiI	CCGC	1 cut(s)	365
SspI	AATATT	2 cut(s)	399, 496
SspMI	CTAG	3 cut(s)	83, 440, 539
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	40, 235
TaqI	TCGA	1 cut(s)	158
TasI	AATT	3 cut(s)	100, 222, 488
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	237, 450
Tru9I	TTAA	2 cut(s)	237, 450
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	222, 374
TspGWI	ACGGA	1 cut(s)	491
XapI	RAATTY	2 cut(s)	100, 488
XceI	RCATGY	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	83, 440, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.