Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

76807295 .. 76812527

Gene Structure 5233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG551300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGGAGTACTATGACTATGGCTAGTAATAAATGTGTTCACAAAAATGGACGTCTAGTTTTGAGGATTGGGAGTTTTGAAGCTATCAACCACAACCCGAATCACAGTAACAATAATAAGGATGCACCTTCGATGGATGACCGTCTTACTGCTTATCTGTTTGAAATGGGGTGTTATGATGAAAATATGGTTCGAGTTCCAATGACTGTTAATAGGGGGATTGATTATCATATGGATTTAGGGGGAATAGGACCTGCCCGTTTTGCTGTGGAAGAATTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCATAGATGTATGTATGAACTAATATTGGATGCAGTTGATGCCGCTGGTGTGGTGAACTTTTACCTAGCATATGTTGAGATAGATGATATAAATGAGGGCATGTGGTTGGAAGAATTCAATATTTTCCGTGATAATGGATACCCTGCAAGACTATATCATCACCTAGGGGGAATAGGACCTGCCCGTTTTGCTGTGGAAGAGTTCAACAAGCGAAAGGTATACATGAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

193

Amino Acids

22.33

Weight (kDa)

7.09

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	55
Acc36I	ACCTGC	2 cut(s)	262, 535
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	338, 390
AcsI	RAATTY	2 cut(s)	275, 461
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	80, 164, 280, 466, 553
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	275, 461
AspA2I	CCTAGG	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	251, 524
AsuHPI	GGTGA	2 cut(s)	412, 500
AvaII	GGWCC	2 cut(s)	251, 524
AvrII	CCTAGG	1 cut(s)	511
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	479
BfaI	CTAG	4 cut(s)	24, 56, 413, 512
BfuAI	ACCTGC	2 cut(s)	262, 535
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	2 cut(s)	338, 390
BlnI	CCTAGG	1 cut(s)	511
BlsI	GCNGC	2 cut(s)	339, 391
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	2 cut(s)	251, 524
BmgT120I	GGNCC	2 cut(s)	251, 524
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	112, 367, 376
BsaHI	GRCGYC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	4 cut(s)	127, 142, 336, 382
BsgI	GTGCAG	1 cut(s)	338
BspACI	CCGC	2 cut(s)	338, 390
BspMI	ACCTGC	2 cut(s)	262, 535
BssECI	CCNNGG	1 cut(s)	511
BssNAI	GTATAC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	3 cut(s)	107, 143, 208
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstF5I	GGATG	4 cut(s)	127, 142, 336, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 386, 536
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	326
BstZ17I	GTATAC	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	127, 142, 336, 382
BveI	ACCTGC	2 cut(s)	262, 535
Cfr13I	GGNCC	2 cut(s)	251, 524
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	448, 571
CviJI	RGCY	3 cut(s)	23, 83, 337
CviKI_1	RGCY	3 cut(s)	23, 83, 337
CviQI	GTAC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	251, 524
EcoO109I	RGGNCCY	2 cut(s)	251, 524
EcoRI	GAATTC	2 cut(s)	275, 461
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	2 cut(s)	451, 574
FatI	CATG	2 cut(s)	447, 570
FauNDI	CATATG	2 cut(s)	231, 418
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	338, 390
FokI	GGATG	4 cut(s)	134, 149, 343, 389
Fsp4HI	GCNGC	2 cut(s)	338, 390
FspBI	CTAG	4 cut(s)	24, 56, 413, 512
GluI	GCNGC	2 cut(s)	338, 390
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	451, 574
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	2 cut(s)	412, 500
Hpy166II	GTNNAC	3 cut(s)	40, 403, 568
Hpy8I	GTNNAC	3 cut(s)	40, 403, 568
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	3 cut(s)	107, 143, 208
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	125, 304, 319, 380, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 386, 536
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	451, 574
LpnPI	CCDG	6 cut(s)	267, 313, 340, 378, 504, 540
LweI	GCATC	3 cut(s)	112, 367, 376
MaeI	CTAG	4 cut(s)	24, 56, 413, 512
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	107
MboII	GAAGA	3 cut(s)	284, 470, 557
MluCI	AATT	2 cut(s)	275, 461
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	2 cut(s)	57, 436
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	340, 392
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	263, 386, 536
NdeI	CATATG	2 cut(s)	231, 418
NlaIII	CATG	2 cut(s)	451, 574
NspI	RCATGY	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	339, 391
PpuMI	RGGWCCY	2 cut(s)	251, 524
Psp5II	RGGWCCY	2 cut(s)	251, 524
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	2 cut(s)	251, 524
PspPPI	RGGWCCY	2 cut(s)	251, 524
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	338, 390
Sau96I	GGNCC	2 cut(s)	251, 524
ScaI	AGTACT	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	9 cut(s)	55, 85, 130, 256, 329, 414, 513, 529, 567
SfaNI	GCATC	3 cut(s)	112, 367, 376
SinI	GGWCC	2 cut(s)	251, 524
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	275, 461
SsiI	CCGC	2 cut(s)	338, 390
SspI	AATATT	2 cut(s)	372, 469
SspMI	CTAG	4 cut(s)	24, 56, 413, 512
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	107, 143, 208
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	131, 193
TasI	AATT	2 cut(s)	275, 461
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	2 cut(s)	340, 392
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TspDTI	ATGAA	3 cut(s)	195, 347, 378
TspGWI	ACGGA	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	251, 524
XapI	RAATTY	2 cut(s)	275, 461
XceI	RCATGY	1 cut(s)	451
XmaJI	CCTAGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	4 cut(s)	24, 56, 413, 512
ZraI	GACGTC	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.