Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

60980549 .. 60982642

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTCTTCGTTGTATGCTTGGAAAGCTGGGGAACAATAATAAATTTCTCCACAATAAAGGAAGAGTTACGATGCTCGGTACCTTTGAAGTTTTCAAACACAAAAACAAGGAATTGCTTTCAATGGCTTTCCCTACTCATTCCTCTCCTCACCATTTTGGGGACCTTGAAAATCGTGCCTCCATACCAATGGCTACTAGGAGAGAGGTTTTGGATTATCATACAGAAGTAGGAGGACTAAGACCTGCCCGTTTCGCATTGGAAGAGTTCAACAAGATAAAGAAAGCCCAACTACAGCTTGTGAGAGTGGTGGGACTCTGGATGAAGCCACAGGGTTATCCTCATGATCCTTGTCATTGTTTATATGTTGTAGTAATGGAGGCGGTTGATGCCGATGGTGTGGCACTACTTTACCAAGCACGTGTTCAGCTCCATGATTTAACTGAGGGCGGCATGTTTTTGGAAGCAGTCTATGGCTTTTATGATAATTATGGCCTAATAAGATATATTAGACTATATCATCACCTAGACAACTTCTATAACTCTATGTTTCCTGAGAGTGCAACGGAATGGTGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

193

Amino Acids

22.44

Weight (kDa)

7.8

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	2 cut(s)	383, 450
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	5 cut(s)	89, 97, 123, 170, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	3 cut(s)	28, 298, 430
AluI	AGCT	3 cut(s)	28, 298, 430
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	44
Asp718I	GGTACC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	143, 515
AvaII	GGWCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	422
BccI	CCATC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	198, 527
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	82, 164
BmsI	GCATC	2 cut(s)	63, 379
BsaAI	YACGTR	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	435, 546
BseRI	GAGGAG	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	176, 327
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	176, 327
BsnI	GGCC	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	2 cut(s)	383, 450
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	2 cut(s)	436, 547
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	82, 164
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	80
BssMI	GATC	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	12, 58, 258
BstBAI	YACGTR	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	239, 444, 555
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 254, 389
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	3 cut(s)	344, 434, 454
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	3 cut(s)	239, 444, 555
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	3 cut(s)	12, 58, 258
EarI	CTCTTC	3 cut(s)	12, 58, 258
Eco47I	GGWCC	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	163
FaeI	CATG	3 cut(s)	347, 437, 457
FaqI	GGGAC	2 cut(s)	176, 327
FatI	CATG	3 cut(s)	343, 433, 453
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	2 cut(s)	198, 527
GluI	GCNGC	1 cut(s)	451
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	347, 437, 457
HinfI	GANTC	1 cut(s)	315
HphI	GGTGA	2 cut(s)	143, 515
Hpy188III	TCNNGA	3 cut(s)	319, 344, 554
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 254, 389
HpyF3I	CTNAG	3 cut(s)	239, 444, 555
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	347, 437, 457
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	346
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	5 cut(s)	14, 258, 304, 317, 567
LweI	GCATC	2 cut(s)	63, 379
MaeI	CTAG	2 cut(s)	198, 527
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	2 cut(s)	75, 275
MluCI	AATT	3 cut(s)	44, 113, 487
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	8 cut(s)	154, 159, 190, 199, 227, 351, 373, 439
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	25, 254, 389
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	347, 437, 457
NlaIV	GGNNCC	2 cut(s)	82, 164
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	422
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspCI	CACGTG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	82, 164
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	309
SetI	ASST	9 cut(s)	30, 86, 168, 210, 247, 300, 424, 432, 528
SfaNI	GCATC	2 cut(s)	63, 379
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	44, 113, 487
SsiI	CCGC	2 cut(s)	383, 450
SspMI	CTAG	2 cut(s)	198, 527
TaiI	ACGT	1 cut(s)	424
TasI	AATT	3 cut(s)	44, 113, 487
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	2 cut(s)	198, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.