MD15G1382800.v1.1

ribosomal protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
47163695 .. 47166448
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1382800.v1.1.491

Sequence Viewer

Length: 216 bp
ATGAGGAAAGAGTTGTGGCGTTCCCCGGGATATTATTATCAACGTTATTATGAACTGGTGTTGGAGGCAGTTGATGCCGATGAGGCTGAATTTTACCAAGCACAAGTTGCGGTAGATTCCGTTGATGACATAATGTGGTTGGAAGTGTTTTGCGTCATGGATGAACATTATTCTTTAAGACTATATCATCACTTAGACAACTTTTTTGATGAATGA

Protein Analysis

72

Amino Acids

8.77

Weight (kDa)

4.33

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AclI AACGTT 1 cut(s) 43
AcsI RAATTY 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 25
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 1 cut(s) 188
AsuC2I CCSGG 2 cut(s) 26, 27
AvaI CYCGRG 1 cut(s) 25
BcnI CCSGG 2 cut(s) 26, 27
BglI GCCNNNNNGGC 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 26, 27
BmeT110I CYCGRG 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 26, 27
BmsI GCATC 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 26, 27
BsaJI CCNNGG 2 cut(s) 24, 25
Bse1I ACTGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 24, 25
BseGI GGATG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 25
BspACI CCGC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 24, 25
BstAPI GCANNNNNTGC 2 cut(s) 74, 107
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 107
BstSCI CCNGG 2 cut(s) 24, 25
BtsCI GGATG 1 cut(s) 166
Cfr9I CCCGGG 1 cut(s) 25
CseI GACGC 1 cut(s) 142
CviAII CATG 1 cut(s) 157
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
DdeI CTNAG 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 25
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 51, 131, 158, 184
FatI CATG 1 cut(s) 156
FokI GGATG 1 cut(s) 173
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 160
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 107
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 1 cut(s) 160
LpnPI CCDG 2 cut(s) 39, 41
LweI GCATC 1 cut(s) 64
MaeII ACGT 1 cut(s) 43
MluCI AATT 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 42, 120
MnlI CCTC 2 cut(s) 58, 76
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 26, 27
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 107
NciI CCSGG 2 cut(s) 26, 27
NlaIII CATG 1 cut(s) 160
PfeI GAWTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 43
SaqAI TTAA 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 26, 27
SetI ASST 1 cut(s) 46
SfaNI GCATC 1 cut(s) 64
SgeI CNNG 7 cut(s) 37, 38, 39, 68, 110, 116, 169
SmaI CCCGGG 1 cut(s) 27
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 24, 25
TaiI ACGT 1 cut(s) 46
TasI AATT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 66, 177
TspGWI ACGGA 1 cut(s) 109
TspMI CCCGGG 1 cut(s) 25
XapI RAATTY 1 cut(s) 89
XmaI CCCGGG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.