Prupe.1G582300_v2.0.a1

DNA-directed RNA polymerase III subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000459
Physical Location & Seq
Reverse (-)
47307266 .. 47308673
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G582300.1

Sequence Viewer

Length: 426 bp
ATGGCGTATAGAGGGCGTGGACGTGGTGGATTTGGAGGAGGTGGTGGCGGTTTTGGCTATGCCATTCAAGTTCCCTTTGAGGTTTTTCCTGAAGTTGATTTGCCTAATGTCAAAGGTATATTTGATCCAGAGAAGAAGGTAAACAAGGGTCTGAGTGAGGAAGAAAACTTAGTCAATCAAAGTCTCAAGTTTCAAAAAATTTGGAAAGGCTCTCTTTTCTATCTGGAGCAGACCTCTTCAAAGGAGAGGCAAAACACAGAAGTAGAAAGATATTCTGACAGGTTGAAGCCAAAAACCACCATAAGAAGCGGTCCTTTTTTTGTTATATTGGAGCTCAAGGGATTTCCCCAAGAACTGACTGGAGGTTCAAGGGCACAACAACCAGGCCGAAAGAGAGTTCGATGGAATCCTGACTCAGTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
RNA_pol_3_Rpc31

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

9.77

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 48, 309
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 111
AgsI TTSAA 5 cut(s) 68, 194, 240, 286, 369
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 385
ApoI RAATTY 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 311
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 384
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 2 cut(s) 245, 381
BpuEI CTTGAG 2 cut(s) 170, 320
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 376
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 336
BslFI GGGAC 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 336, 376
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 48, 309
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 364
BssMI GATC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 241
BstDEI CTNAG 3 cut(s) 152, 169, 415
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 376
BsuRI GGCC 1 cut(s) 387
BtrI CACGTC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 311
CviAII CATG 1 cut(s) 423
CviJI RGCY 5 cut(s) 57, 210, 289, 334, 387
CviKI_1 RGCY 5 cut(s) 57, 210, 289, 334, 387
DdeI CTNAG 3 cut(s) 152, 169, 415
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 1 cut(s) 426
FaiI YATR 6 cut(s) 9, 60, 119, 302, 326, 424
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 298, 330
FaqI GGGAC 1 cut(s) 404
FatI CATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 336
GsuI CTGGAG 2 cut(s) 245, 381
HaeIII GGCC 1 cut(s) 387
Hin1II CATG 1 cut(s) 426
HinfI GANTC 2 cut(s) 406, 413
Hpy166II GTNNAC 2 cut(s) 20, 142
Hpy188I TCNGA 2 cut(s) 153, 277
Hpy188III TCNNGA 4 cut(s) 89, 128, 224, 410
Hpy8I GTNNAC 2 cut(s) 20, 142
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 3 cut(s) 152, 169, 415
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 426
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 226, 331
LpnPI CCDG 7 cut(s) 102, 141, 209, 265, 345, 369, 396
MaeII ACGT 1 cut(s) 22
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 145, 173, 228
MhlI GDGCHC 2 cut(s) 336, 376
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 8 cut(s) 5, 29, 32, 73, 151, 240, 244, 356
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 426
PfeI GAWTC 1 cut(s) 406
PflFI GACNNNGTC 1 cut(s) 416
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspPI GGNCC 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 416
SacI GAGCTC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 336, 376
SetI ASST 9 cut(s) 25, 43, 84, 118, 141, 236, 284, 336, 367
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 185, 335
SmoI CTYRAG 2 cut(s) 185, 335
Sse9I AATT 1 cut(s) 198
SsiI CCGC 2 cut(s) 48, 309
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 382
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 400
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 406
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.