FvH4_4g18161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000459
Physical Location & Seq
Reverse (-)
22095852 .. 22096528
677 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18161.t1

Sequence Viewer

Length: 519 bp
ATGGAAGAAGCAAAGATCTTGGCAAAGCAAACTAAAGTTTTCAATATGTATTTGACAATGTTGTTGATCAAAGAGAGCCTGGGGTGGCTGGAGGAGACGACAGAGTATTATCTTGACCAGACTGCAGGTAAAGATAAGCGGCGAAAGGGTAACAGAGAAATCAACTCTTTCTCACAGTACTTGGTGCCGAGTATGTTTCCTAGAGAACTGACTAGAGGTTCGACCGTGAGGGAGGTAAGCAGGGACAAAGTTGAGTGGGACAGGAAGAAGGAAGAGATGTACTTGGATCGGATTGAGAAGATGGAACAGGAAAGGGATGCCAAGGAAAAGAAGAAACCAGAAAAGGGTGAAGATGAAGATGAGGATGATGGTGATGAGGAAGACGAAGAGGATGAATTTGAATTTGACGATGATTATATATATGATCCTCCGAAGGCAGACGATGACGAAGATGATTATAATGATGATGAGGAGGGTGCCGATGAACCCGAGTTGGAGTTGTACTTGGATCGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.6

Weight (kDa)

4.25

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 184, 476
AciI CCGC 1 cut(s) 139
AclWI GGATC 3 cut(s) 294, 419, 516
AcsI RAATTY 2 cut(s) 395, 401
AfaI GTAC 3 cut(s) 179, 281, 503
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 43, 401
AjnI CCWGG 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 294, 419, 516
Ama87I CYCGRG 1 cut(s) 488
ApoI RAATTY 2 cut(s) 395, 401
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
AsuHPI GGTGA 2 cut(s) 359, 383
AvaI CYCGRG 1 cut(s) 488
BanI GGYRCC 2 cut(s) 184, 476
BbsI GAAGAC 1 cut(s) 387
BccI CCATC 2 cut(s) 295, 362
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 201, 213
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 15
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 186, 478
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 79, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 79, 321
BseGI GGATG 3 cut(s) 322, 370, 397
BseLI CCNNNNNNNGG 1 cut(s) 344
BseRI GAGGAG 2 cut(s) 107, 485
Bsh1285I CGRYCG 1 cut(s) 225
BshNI GGYRCC 2 cut(s) 184, 476
BsiEI CGRYCG 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 257, 272
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 257, 272
BsoBI CYCGRG 1 cut(s) 488
Bsp143I GATC 5 cut(s) 15, 66, 286, 424, 508
BspACI CCGC 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 186, 478
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 3 cut(s) 294, 419, 516
BspT107I GGYRCC 2 cut(s) 184, 476
BssECI CCNNGG 2 cut(s) 79, 321
BssMI GATC 5 cut(s) 15, 66, 286, 424, 508
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 177, 226
Bst6I CTCTTC 2 cut(s) 267, 381
BstF5I GGATG 3 cut(s) 322, 370, 397
BstKTI GATC 5 cut(s) 18, 69, 289, 427, 511
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 5 cut(s) 15, 66, 286, 424, 508
BstMCI CGRYCG 1 cut(s) 225
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BtsCI GGATG 3 cut(s) 322, 370, 397
BveI ACCTGC 1 cut(s) 116
Csp6I GTAC 3 cut(s) 178, 280, 502
CviJI RGCY 2 cut(s) 78, 88
CviKI_1 RGCY 2 cut(s) 78, 88
CviQI GTAC 3 cut(s) 178, 280, 502
DpnI GATC 5 cut(s) 17, 68, 288, 426, 510
DpnII GATC 5 cut(s) 15, 66, 286, 424, 508
Eam1104I CTCTTC 2 cut(s) 267, 381
EarI CTCTTC 2 cut(s) 267, 381
Eco130I CCWWGG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 89
FaiI YATR 7 cut(s) 47, 194, 417, 419, 421, 423, 459
FaqI GGGAC 2 cut(s) 257, 272
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 3 cut(s) 329, 377, 404
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 201, 213
GluI GCNGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 110
HphI GGTGA 2 cut(s) 359, 383
Hpy188I TCNGA 2 cut(s) 291, 432
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 262, 427
HpyCH4III ACNGT 2 cut(s) 177, 226
HpyCH4V TGCA 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 5 cut(s) 15, 66, 286, 424, 508
LpnPI CCDG 9 cut(s) 65, 74, 92, 111, 131, 226, 247, 293, 351
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 201, 213
MaeIII GTNAC 1 cut(s) 149
MalI GATC 5 cut(s) 17, 68, 288, 426, 510
MboI GATC 5 cut(s) 15, 66, 286, 424, 508
MflI RGATCY 1 cut(s) 15
MluCI AATT 2 cut(s) 395, 401
MmeI TCCRAC 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
NdeII GATC 5 cut(s) 15, 66, 286, 424, 508
NlaIV GGNNCC 2 cut(s) 186, 478
NmeAIII GCCGAG 1 cut(s) 213
PkrI GCNGC 1 cut(s) 141
PsiI TTATAA 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 186, 478
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 3 cut(s) 179, 281, 503
RsaNI GTAC 3 cut(s) 178, 280, 502
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 5 cut(s) 15, 66, 286, 424, 508
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 80
SetI ASST 3 cut(s) 130, 220, 237
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 123
Sse9I AATT 2 cut(s) 395, 401
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 201, 213
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 177, 226
TaqI TCGA 2 cut(s) 221, 511
TasI AATT 2 cut(s) 395, 401
TatI WGTACW 3 cut(s) 177, 279, 501
TauI GCSGC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 369, 408, 498
XapI RAATTY 2 cut(s) 395, 401
XspI CTAG 2 cut(s) 201, 213
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.