Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

76732387 .. 76735886

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG551000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCGAGGTATGACACTATGACATTTACAAGAGGATTGATGCTAGCTATTTTAGATACAGGGACGACGACGATGGGTTTTGGAGAAGCTGGAAGTTGTGGCAGAGGAGAAGATGAGGGCGAAGCTGCTCTACTCAGAGTTCTACATTTCAAGAATATGGCTTTTCGTTCTGTGCTTGGAAAGATGGGGAAAACTGTGACTATGACGAGTAGCAAATGTATTCACAAAAATGGAAGACTAGTTTTGAAGCTTGGGAATTTTGAGGCCGAAGCTATCAACCACAAAAACAATAACAATAATAAGGATGCGCCTTCGATGGATGATCCTCTTACTGCTTATCTCTCTGAAATGGGTTGTTATGATGAATATGGGATTCTAATTCCAATGACTGTTAATCGGGGGATTGATTATCATATGGATTTGGGGGGTATAGGGCCTGCCCATTTTGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCGTAAATGTATGTATAGACTAATATTGGAAGCAGCTGATGCCACCGGTGTGGTGAACTTTTACCTAGTGTATGTTAAGATAGATGATTTGACTGAGGGCATGTGGTTGAAAGAATTCAATATTTTCCGTGATAGTGGATACCCTTCAAGACTATATCATCACCTAGACAACTTCTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

238

Amino Acids

27.13

Weight (kDa)

7.7

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	2 cut(s)	256, 644
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	7 cut(s)	151, 247, 463, 640, 649, 678, 713
AhlI	ACTAGT	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	509
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	6 cut(s)	47, 89, 125, 250, 272, 566
AluI	AGCT	6 cut(s)	47, 89, 125, 250, 272, 566
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	264, 434
ApeKI	GCWGC	2 cut(s)	125, 563
ApoI	RAATTY	2 cut(s)	256, 644
ArsI	GACNNNNNNTTYG	1 cut(s)	689
AsiGI	ACCGGT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	595, 683
AsuNHI	GCTAGC	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	112, 575
BccI	CCATC	3 cut(s)	67, 178, 310
BciT130I	CCWGG	1 cut(s)	511
BciVI	GTATCC	1 cut(s)	662
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	4 cut(s)	44, 239, 596, 695
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	3 cut(s)	126, 521, 564
BlsI	GCNGC	3 cut(s)	127, 522, 565
Bme1390I	CCNGG	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	3 cut(s)	30, 295, 559
BmtI	GCTAGC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	575
Bse118I	RCCGGY	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	3 cut(s)	310, 325, 519
BseMII	CTCAG	2 cut(s)	148, 615
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	112, 575
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	2 cut(s)	266, 436
BshTI	ACCGGT	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	266, 436
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	2 cut(s)	266, 436
BspCNI	CTCAG	2 cut(s)	147, 616
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	196, 391
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	45, 438
BstDEI	CTNAG	2 cut(s)	134, 624
BstF5I	GGATG	3 cut(s)	310, 325, 519
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 569
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	112, 575
BstV2I	GAAGAC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	266, 436
BtsCI	GGATG	3 cut(s)	310, 325, 519
Cac8I	GCNNGC	2 cut(s)	45, 438
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	1 cut(s)	434
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	1 cut(s)	631
DdeI	CTNAG	2 cut(s)	134, 624
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	509
FaeI	CATG	1 cut(s)	634
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	630
FauNDI	CATATG	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	126, 521, 564
FokI	GGATG	3 cut(s)	317, 332, 526
Fsp4HI	GCNGC	3 cut(s)	126, 521, 564
FspBI	CTAG	4 cut(s)	44, 239, 596, 695
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	126, 521, 564
HaeIII	GGCC	2 cut(s)	266, 436
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	634
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	2 cut(s)	595, 683
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	2 cut(s)	137, 346
Hpy188III	TCNNGA	2 cut(s)	151, 678
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	2 cut(s)	70, 73
HpyAV	CCTTC	2 cut(s)	321, 684
HpyCH4III	ACNGT	2 cut(s)	196, 391
HpyCH4V	TGCA	2 cut(s)	487, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 569
HpyF3I	CTNAG	2 cut(s)	134, 624
Hsp92II	CATG	1 cut(s)	634
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	6 cut(s)	45, 75, 450, 496, 523, 589
Lsp1109I	GCAGC	2 cut(s)	112, 575
LweI	GCATC	3 cut(s)	30, 295, 559
MaeI	CTAG	4 cut(s)	44, 239, 596, 695
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	3 cut(s)	122, 246, 467
MluCI	AATT	3 cut(s)	256, 378, 644
MnlI	CCTC	6 cut(s)	26, 98, 109, 256, 336, 619
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	2 cut(s)	393, 606
MslI	CAYNNNNRTG	2 cut(s)	228, 578
MspA1I	CMGCKG	2 cut(s)	523, 566
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	2 cut(s)	446, 569
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	1 cut(s)	322
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	634
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	634
OliI	CACNNNNGTG	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	127, 522, 565
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	566
RseI	CAYNNNNRTG	2 cut(s)	228, 578
SaqAI	TTAA	2 cut(s)	393, 606
SatI	GCNGC	3 cut(s)	126, 521, 564
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	511
SfaNI	GCATC	3 cut(s)	30, 295, 559
SgrAI	CRCCGGYG	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	228, 578
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	3 cut(s)	256, 378, 644
SsiI	CCGC	1 cut(s)	521
SspI	AATATT	2 cut(s)	555, 652
SspMI	CTAG	4 cut(s)	44, 239, 596, 695
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	196, 391
TaqI	TCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	256, 378, 644
TauI	GCSGC	1 cut(s)	523
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	393, 606
Tru9I	TTAA	2 cut(s)	393, 606
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	125, 563
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	378, 530
TspGWI	ACGGA	1 cut(s)	647
XapI	RAATTY	2 cut(s)	256, 644
XceI	RCATGY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	4 cut(s)	44, 239, 596, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.