Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

24030592 .. 24032148

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTTGGAAAGCTGGGCAACAATAATAAATTTCTCTGCTATAAAGGAAGAGCTATGATGCTTGGGACCTTTGAAGTTATCAAACACAAAAATAAGGAATTGCTTTCAACGGTTTTTCCAACTCATTCCTCTCCTCTTCATTTTCAGGACCTTGAATTTCGTGCCCCCGTACCCATAACTACTAGGAAAGAGGGTTGGTATGATCATATGGGATTGGGAGGACTAGGACCTGCCCATTTCGCATTGGAAGAGTTCAACAAGATAAAGAAAGCCCAACTGCAGCTTTTGAGAGTGGTGGGACTCTGGATGAAGCCGCAGGGTTATCCTCCTCATAATCCTTGTCATTGTTTATATGTTGAAATTAATAATGGAGGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

126

Amino Acids

14.28

Weight (kDa)

9.38

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	29, 155
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	5 cut(s)	74, 108, 155, 256, 359
AluBI	AGCT	3 cut(s)	13, 53, 283
AluI	AGCT	3 cut(s)	13, 53, 283
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	29, 155
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	66, 148, 227
AvaII	GGWCC	3 cut(s)	66, 148, 227
BaeGI	GKGCMC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	2 cut(s)	183, 224
BfmI	CTRYAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	2 cut(s)	281, 314
BlsI	GCNGC	2 cut(s)	282, 315
Bme18I	GGWCC	3 cut(s)	66, 148, 227
BmgT120I	GGNCC	3 cut(s)	66, 148, 227
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	48
BseGI	GGATG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	123, 318
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	79, 312
BsmFI	GGGAC	2 cut(s)	79, 312
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	43
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	3 cut(s)	43, 141, 243
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 239
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	66, 148, 227
Csp6I	GTAC	1 cut(s)	170
CviJI	RGCY	5 cut(s)	13, 53, 272, 283, 313
CviKI_1	RGCY	5 cut(s)	13, 53, 272, 283, 313
CviQI	GTAC	1 cut(s)	170
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	43, 141, 243
EarI	CTCTTC	3 cut(s)	43, 141, 243
Eco47I	GGWCC	3 cut(s)	66, 148, 227
EcoO109I	RGGNCCY	3 cut(s)	66, 148, 227
FaiI	YATR	9 cut(s)	42, 56, 176, 201, 207, 209, 333, 352, 354
FaqI	GGGAC	2 cut(s)	79, 312
FauNDI	CATATG	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	281, 314
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	2 cut(s)	281, 314
FspBI	CTAG	2 cut(s)	183, 224
GluI	GCNGC	2 cut(s)	281, 314
GsaI	CCCAGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	146, 304
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 239
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	131, 243, 289, 302
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	183, 224
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	60, 128, 260
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	4 cut(s)	29, 98, 155, 360
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	7 cut(s)	139, 144, 184, 212, 336, 339, 365
MseI	TTAA	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	10, 239
NdeI	CATATG	1 cut(s)	207
NdeII	GATC	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	282, 315
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PpuMI	RGGWCCY	3 cut(s)	66, 148, 227
PshBI	ATTAAT	1 cut(s)	363
Psp5II	RGGWCCY	3 cut(s)	66, 148, 227
PspFI	CCCAGC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	66, 148, 227
PspPPI	RGGWCCY	3 cut(s)	66, 148, 227
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	281, 314
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	3 cut(s)	66, 148, 227
SchI	GAGTC	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	6 cut(s)	15, 55, 71, 153, 232, 285
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	3 cut(s)	66, 148, 227
Sse9I	AATT	4 cut(s)	29, 98, 155, 360
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	2 cut(s)	183, 224
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	4 cut(s)	29, 98, 155, 360
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	128, 323
VpaK11BI	GGWCC	3 cut(s)	66, 148, 227
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	29, 155
XspI	CTAG	2 cut(s)	183, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.