Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

45642540 .. 45645146

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCATCACCGGTGTGGACCGAGATGGTGGCGGTCGTGGCGTTGTTGCGGATGCCGCCGCAGGTGGACTCGGATTTGGTGGTGGATTGGCCGAGGACTTCGCCGGTTGGAATTGACCGGTTGCGGGGAGATGCCGAGGCGAGAATTGGTCGATGGGGGTGTTTAAAGGCGGTGGGGACAAGACAAACTAATCTTATGGCTATTCGTTCTGTGCTCGGAAAGCTGCCCAAGACTTGTAAATATGAAAGACTTGTGATTGGGACATATGAAGGTATCAAACATAATAAACCCCCTACTGCTCCTCGTCCTTTTCCTTTTCGGCTCCATGAAAATCATGTTCCTATGCCCTTAACAGACCCGATTAAGACAAAGGGATTGATTTATCATATGGAGTTGGGAGGACTGGCGCCTGCACGTTTTGCCGTGCAAGAGTTCAACAAGCAAAAGAAATCCCAACTGCAGTTTGTGAGATTGATCAAGTTTTTGAGAGTAGATAGAAGCTGTATGAAGCTGCAGCCTTTGGATTTAAATTCTTGTCATTGTTTCTATGCTCTAATATTGGAGGCAATTGATGCTGCCGGTGTGGTCAAATTCTACCAAGCATGTGTTAGGCTGCACGACTTAACTGAGGGCTTGTGGTTGGAAGAATTCTATGTTTTCTCCGATGATGGAGACAAGCGTATGCGACTATATCATCACCTAGTTCATTTGCTTGAAACAGACAACTTTTATGCTGGATTACACGACAAGCATGTCATACCTGGCAAAGGTGAAAGTGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

261

Amino Acids

29.67

Weight (kDa)

9.08

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
AasI	GACNNNNNNGTC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	7 cut(s)	32, 49, 56, 59, 124, 170, 780
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	529, 590, 647
AcyI	GRCGYC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	124, 767
AgeI	ACCGGT	2 cut(s)	10, 117
AgsI	TTSAA	2 cut(s)	436, 716
AjnI	CCWGG	1 cut(s)	760
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	3 cut(s)	223, 501, 511
AluI	AGCT	3 cut(s)	223, 501, 511
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	666
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	223, 511, 514, 575, 613
ApoI	RAATTY	3 cut(s)	529, 590, 647
AsiGI	ACCGGT	2 cut(s)	10, 117
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	689, 782
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	210, 498, 526, 562, 600
BccI	CCATC	3 cut(s)	19, 147, 662
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	762
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	2 cut(s)	458, 512
BfoI	RGCGCY	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	8 cut(s)	56, 59, 224, 512, 515, 576, 614, 780
BlsI	GCNGC	8 cut(s)	57, 60, 225, 513, 516, 577, 615, 781
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	323, 408
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	4 cut(s)	14, 42, 121, 562
BsaHI	GRCGYC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	92, 135
BsaWI	WCCGGW	2 cut(s)	10, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 767
Bse118I	RCCGGY	4 cut(s)	10, 103, 117, 578
Bse1I	ACTGG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	92, 135
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	124, 767
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	5 cut(s)	210, 498, 526, 562, 600
BsgI	GTGCAG	2 cut(s)	396, 599
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	406
BshTI	ACCGGT	2 cut(s)	10, 117
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	4 cut(s)	11, 104, 118, 579
BslFI	GGGAC	2 cut(s)	190, 274
BslI	CCNNNNNNNGG	2 cut(s)	124, 767
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	2 cut(s)	190, 274
BsnI	GGCC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	474
BspACI	CCGC	7 cut(s)	32, 49, 56, 59, 124, 170, 780
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	323, 408
BspMAI	CTGCAG	2 cut(s)	462, 516
BspMI	ACCTGC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	406
BsrFI	RCCGGY	4 cut(s)	10, 103, 117, 578
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	4 cut(s)	10, 103, 117, 578
BssECI	CCNNGG	2 cut(s)	92, 135
BssMI	GATC	1 cut(s)	474
BssNI	GRCGYC	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	762
BstACI	GRCGYC	1 cut(s)	407
BstAPI	GCANNNNNTGC	2 cut(s)	419, 572
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	1 cut(s)	627
BstENI	CCTNNNNNAGG	1 cut(s)	765
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	1 cut(s)	474
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 55, 220, 419, 572
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	2 cut(s)	606, 755
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	2 cut(s)	458, 512
BstV1I	GCAGC	5 cut(s)	210, 498, 526, 562, 600
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	4 cut(s)	10, 103, 117, 578
Cfr13I	GGNCC	1 cut(s)	18
CspAI	ACCGGT	2 cut(s)	10, 117
CviAII	CATG	4 cut(s)	326, 335, 603, 752
CviJI	RGCY	9 cut(s)	91, 200, 223, 322, 501, 511, 517, 613, 633
CviKI_1	RGCY	9 cut(s)	91, 200, 223, 322, 501, 511, 517, 613, 633
DdeI	CTNAG	1 cut(s)	627
DinI	GGCGCC	1 cut(s)	408
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
DraI	TTTAAA	2 cut(s)	165, 528
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
EaeI	YGGCCR	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	760
EgeI	GGCGCC	1 cut(s)	408
EheI	GGCGCC	1 cut(s)	408
FaeI	CATG	4 cut(s)	329, 338, 606, 755
FalI	AAGNNNNNCTT	1 cut(s)	766
FaqI	GGGAC	2 cut(s)	190, 274
FatI	CATG	4 cut(s)	325, 334, 602, 751
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	2 cut(s)	265, 387
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	8 cut(s)	56, 59, 224, 512, 515, 576, 614, 780
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	8 cut(s)	56, 59, 224, 512, 515, 576, 614, 780
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	8 cut(s)	56, 59, 224, 512, 515, 576, 614, 780
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	4 cut(s)	11, 104, 118, 579
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	4 cut(s)	329, 338, 606, 755
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	4 cut(s)	11, 104, 118, 579
HphI	GGTGA	2 cut(s)	689, 782
Hpy166II	GTNNAC	2 cut(s)	18, 67
Hpy188I	TCNGA	3 cut(s)	73, 218, 664
Hpy8I	GTNNAC	2 cut(s)	18, 67
HpyAV	CCTTC	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	5 cut(s)	413, 427, 460, 514, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 55, 220, 419, 572
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	329, 338, 606, 755
HspAI	GCGC	1 cut(s)	407
KasI	GGCGCC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	304, 327
Lsp1109I	GCAGC	5 cut(s)	210, 498, 526, 562, 600
LweI	GCATC	4 cut(s)	14, 42, 121, 562
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	415
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	1 cut(s)	656
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	6 cut(s)	111, 144, 529, 567, 590, 647
Mly113I	GGCGCC	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	88, 621
MnlI	CCTC	6 cut(s)	87, 130, 312, 392, 556, 622
MseI	TTAA	5 cut(s)	164, 350, 363, 527, 623
MslI	CAYNNNNRTG	1 cut(s)	13
MspI	CCGG	4 cut(s)	11, 104, 118, 579
MspR9I	CCNGG	1 cut(s)	762
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	5 cut(s)	38, 55, 220, 419, 572
NarI	GGCGCC	1 cut(s)	407
NdeI	CATATG	2 cut(s)	265, 387
NdeII	GATC	1 cut(s)	474
NlaIII	CATG	4 cut(s)	329, 338, 606, 755
NlaIV	GGNNCC	2 cut(s)	323, 408
NmeAIII	GCCGAG	2 cut(s)	117, 160
NspI	RCATGY	2 cut(s)	606, 755
OliI	CACNNNNGTG	1 cut(s)	13
PaqCI	CACCTGC	1 cut(s)	52
PinAI	ACCGGT	2 cut(s)	10, 117
PkrI	GCNGC	8 cut(s)	57, 60, 225, 513, 516, 577, 615, 781
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	323, 408
PspPI	GGNCC	1 cut(s)	18
PstI	CTGCAG	2 cut(s)	462, 516
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	5 cut(s)	164, 350, 363, 527, 623
SatI	GCNGC	8 cut(s)	56, 59, 224, 512, 515, 576, 614, 780
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	9 cut(s)	66, 225, 274, 418, 503, 513, 702, 763, 772
SfaNI	GCATC	4 cut(s)	14, 42, 121, 562
SfcI	CTRYAG	2 cut(s)	458, 512
SfoI	GGCGCC	1 cut(s)	408
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	18
SmiI	ATTTAAAT	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	6 cut(s)	111, 144, 529, 567, 590, 647
SsiI	CCGC	7 cut(s)	32, 49, 56, 59, 124, 170, 780
SspDI	GGCGCC	1 cut(s)	406
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	760
SwaI	ATTTAAAT	1 cut(s)	528
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	6 cut(s)	111, 144, 529, 567, 590, 647
TauI	GCSGC	3 cut(s)	58, 61, 782
Tru1I	TTAA	5 cut(s)	164, 350, 363, 527, 623
Tru9I	TTAA	5 cut(s)	164, 350, 363, 527, 623
TseI	GCWGC	5 cut(s)	223, 511, 514, 575, 613
TspDTI	ATGAA	5 cut(s)	258, 282, 342, 521, 695
VpaK11BI	GGWCC	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	765
XapI	RAATTY	3 cut(s)	529, 590, 647
XceI	RCATGY	2 cut(s)	606, 755
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.