Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

83152371 .. 83154306

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG539900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTCTTCGTTCTGTGCTTGGAAAGATGGCGAGTACTATGACTAGTAGTAAATGTATTCACAAAAATGGACGTTTAGTTTTGAGGATTGGGAGTTTTGAAGCTATCAACCACAACCCCAATCACAGTAACAATAATAAGGATGCGCCTTCGATGGATGACCCTCTTACTGCTTATCTGTTTGAAATGGGGTGTTATGATGAAAATATGGTTCGAATTCCAATGACTGTTAATAGGGGGATTGATTATCATATGGATTTAGGGGGAATAGGACCTGCCCGTTTTGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCGCGCTGTATCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

9.79

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccII	CGCG	2 cut(s)	361, 363
AciI	CCGC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	101, 185, 301
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	3 cut(s)	148, 363, 365
AspS9I	GGNCC	1 cut(s)	272
AsuII	TTCGAA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	272
BccI	CCATC	2 cut(s)	22, 148
BciT130I	CCWGG	1 cut(s)	349
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	349
BseGI	GGATG	3 cut(s)	148, 163, 357
BsePI	GCGCGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	361, 363
Bsp119I	TTCGAA	1 cut(s)	214
BspACI	CCGC	1 cut(s)	359
BspFNI	CGCG	2 cut(s)	361, 363
BspMI	ACCTGC	1 cut(s)	283
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	214
BssHII	GCGCGC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	128, 229
Bst6I	CTCTTC	2 cut(s)	12, 288
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	148, 163, 357
BstFNI	CGCG	2 cut(s)	361, 363
BstHHI	GCGC	3 cut(s)	148, 363, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstUI	CGCG	2 cut(s)	361, 363
BtsCI	GGATG	3 cut(s)	148, 163, 357
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	3 cut(s)	148, 363, 365
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	3 cut(s)	5, 104, 358
CviKI_1	RGCY	3 cut(s)	5, 104, 358
CviQI	GTAC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	12, 288
EarI	CTCTTC	2 cut(s)	12, 288
Eco47I	GGWCC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	347
FaiI	YATR	6 cut(s)	41, 198, 209, 252, 254, 376
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	3 cut(s)	155, 170, 364
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	3 cut(s)	147, 362, 364
GluI	GCNGC	1 cut(s)	359
HhaI	GCGC	3 cut(s)	148, 363, 365
Hin6I	GCGC	3 cut(s)	146, 361, 363
HinP1I	GCGC	3 cut(s)	146, 361, 363
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	2 cut(s)	128, 229
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	325, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	73
HspAI	GCGC	3 cut(s)	146, 361, 363
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	288, 334, 361
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	305
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	2 cut(s)	78, 174
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	2 cut(s)	361, 363
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeI	CATATG	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	214
PauI	GCGCGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	272
PspPPI	RGGWCCY	1 cut(s)	272
PteI	GCGCGC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	359
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	4 cut(s)	76, 106, 277, 350
SfaNI	GCATC	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	66
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	128, 229
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	152, 214
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TspDTI	ATGAA	2 cut(s)	216, 368
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.