AT4G35685

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000459
Physical Location & Seq
Forward (+)
16919003 .. 16920008
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35685.1

Sequence Viewer

Length: 537 bp
ATGTCTTGGAAAGGAGGCCGAGGAAAACCAAAAGGATATGGCGGCGATTATGGCAAGCCTGAGCCTTTTGTGATTTTCCCTGAAATTACGTTACCTGATCCAAAATCAATCTCAACAGACTCGCAATTAGTTGTAGTTCAAAGCTACTTTACTTTCAATAAGTTTTGGATGAATTCTCCTTATCACTTATGCGATGGTGGTGTTTCTAAGAAAGAGAAAGCGAGTTTAGATATTGAGAGACCTGATAACTTCTCTAAAGAACTTGTTGGAGATACTCGAAGAGAACAACGGCCTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCTTGAGTCTAAGTTTAAGACTCAAGGCAATGAAGAGAAAGAAGACGGAGAAGATGATGAACAAGTTGTGGAATCAGAAGGAGAAGAATCAGATAACGGAGATTATGATCAGAATCAAGACTTTGATGATGATGAAGACGATTATAATCATGAGGAGGATGGTGGATTTGAAGAGGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

178

Amino Acids

20.49

Weight (kDa)

4.36

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 172
AgsI TTSAA 3 cut(s) 140, 157, 524
AluBI AGCT 4 cut(s) 144, 305, 323, 355
AluI AGCT 4 cut(s) 144, 305, 323, 355
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 92
AoxI GGCC 2 cut(s) 16, 290
ApoI RAATTY 1 cut(s) 172
BbsI GAAGAC 2 cut(s) 402, 495
BccI CCATC 2 cut(s) 188, 506
BceAI ACGGC 1 cut(s) 305
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 232
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 402, 495
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 360, 377
BsaBI GATNNNNATC 3 cut(s) 459, 465, 498
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 3 cut(s) 459, 465, 498
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 3 cut(s) 174, 346, 517
BseJI GATNNNNATC 3 cut(s) 459, 465, 498
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 521
BshFI GGCC 2 cut(s) 18, 292
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 18, 292
Bso31I GGTCTC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 97, 460
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 18, 292
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 502
BspPI GGATC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 97, 460
Bst6I CTCTTC 4 cut(s) 274, 293, 381, 519
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 3 cut(s) 60, 207, 363
BstF5I GGATG 3 cut(s) 174, 346, 517
BstKTI GATC 2 cut(s) 100, 463
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 97, 460
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstV2I GAAGAC 2 cut(s) 402, 495
BsuRI GGCC 2 cut(s) 18, 292
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 3 cut(s) 174, 346, 517
Cac8I GCNNGC 1 cut(s) 56
CciI TCATGA 1 cut(s) 502
CviAII CATG 1 cut(s) 503
CviJI RGCY 8 cut(s) 18, 58, 64, 144, 292, 305, 323, 355
CviKI_1 RGCY 8 cut(s) 18, 58, 64, 144, 292, 305, 323, 355
DdeI CTNAG 3 cut(s) 60, 207, 363
DpnI GATC 2 cut(s) 99, 462
DpnII GATC 2 cut(s) 97, 460
Eam1104I CTCTTC 4 cut(s) 274, 293, 381, 519
EarI CTCTTC 4 cut(s) 274, 293, 381, 519
Eco31I GGTCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 1 cut(s) 506
FaiI YATR 6 cut(s) 39, 51, 190, 459, 498, 504
FatI CATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 3 cut(s) 181, 353, 524
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 18, 292
Hin1II CATG 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 7 cut(s) 119, 313, 359, 373, 425, 440, 466
Hpy188I TCNGA 3 cut(s) 430, 445, 465
Hpy188III TCNNGA 3 cut(s) 317, 470, 503
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 3 cut(s) 60, 207, 363
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 2 cut(s) 97, 460
LpnPI CCDG 5 cut(s) 72, 93, 108, 255, 306
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 90
MalI GATC 2 cut(s) 99, 462
MboI GATC 2 cut(s) 97, 460
MboII GAAGA 8 cut(s) 291, 310, 398, 407, 416, 449, 500, 536
MluCI AATT 4 cut(s) 84, 125, 172, 335
MlyI GAGTC 4 cut(s) 113, 322, 367, 368
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 5 cut(s) 8, 14, 499, 502, 520
MseI TTAA 2 cut(s) 369, 535
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 2 cut(s) 97, 460
NlaIII CATG 1 cut(s) 506
NmeAIII GCCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 502
PfeI GAWTC 3 cut(s) 425, 440, 466
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 4 cut(s) 113, 321, 367, 367
PpsI GAGTC 4 cut(s) 113, 321, 367, 367
PsiI TTATAA 1 cut(s) 498
SaqAI TTAA 2 cut(s) 369, 535
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 97, 460
SchI GAGTC 4 cut(s) 113, 322, 367, 368
SetI ASST 8 cut(s) 92, 97, 146, 244, 307, 325, 357, 531
SmlI CTYRAG 2 cut(s) 356, 375
SmoI CTYRAG 2 cut(s) 356, 375
Sse9I AATT 4 cut(s) 84, 125, 172, 335
SsiI CCGC 1 cut(s) 42
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 277
TasI AATT 4 cut(s) 84, 125, 172, 335
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 3 cut(s) 425, 440, 466
Tru1I TTAA 2 cut(s) 369, 535
Tru9I TTAA 2 cut(s) 369, 535
TspDTI ATGAA 4 cut(s) 185, 399, 426, 501
TspGWI ACGGA 2 cut(s) 414, 465
XapI RAATTY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.