Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

28395226 .. 28399735

Gene Structure 4510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36040.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTCTTCGTTGTTTTCTTGGAAAGATGAGGATCGCTAATAAATTTCTCCACAGTAAAGAAAGAATTATGATGCTTGGGACCTCTGAAGTTTTCAAACACAAAAACAAGGAATTGCTTTCAATTGCTTTTCCTACTCTTTCCTCTCCTCGCCATTTTAGGGACACTGAAAATCGTGCCCCCACACCAATAGCTACTAAGAAAGAGGTTTTGGATAATCATATGAATATAGGAGGAATAAGACCTGCCCGTTTTGCGTTGGAAGAGTTCAACACAATAAAGAAAACCCAACTGCAGCTTGTGAGAGTGGTGGGATTTTGGATGAAACCGCAGGGTTATCCTCATAATCCTTGTCATTGTTTATATGTTGTAATAATGAAGGCAGTTGATGCCGATGGTGTGGCACGACTTTACCAAGCCCGTGTACAGCTCCATGAGTCAACTGAGGGCATGTTTTTGGAAGCATTCTATCACTGTTCTACTGATCCCGACAGTGCAAAGTATAATAGGCATTATAAGAGGCTATATCATTTCCTAGGTAATCTACGGTATTATGATGATGATTGCTTCTCTTGGTACATTTGTTCTCTGATTAATTACTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

203

Amino Acids

23.65

Weight (kDa)

9.23

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	253
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	2 cut(s)	41, 479
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	426, 578
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	97, 123, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	194, 298, 430
AluI	AGCT	3 cut(s)	194, 298, 430
AlwI	GGATC	2 cut(s)	41, 479
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	594
AspA2I	CCTAGG	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	81
AvrII	CCTAGG	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	181
BaeI	ACNNNNGTAYC	2 cut(s)	568, 601
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	296
BlnI	CCTAGG	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	63, 379
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	94, 176
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	94, 176
BsmI	GAATGC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	33, 484
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	41, 479
BspQI	GCTCTTC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	2 cut(s)	33, 484
BssT1I	CCWWGG	1 cut(s)	535
Bst4CI	ACNGT	5 cut(s)	56, 476, 494, 549, 602
Bst6I	CTCTTC	2 cut(s)	12, 258
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	198, 444
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	36, 487
BstMBI	GATC	2 cut(s)	33, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 389
BstNSI	RCATGY	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	165, 472, 499
BveI	ACCTGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	425, 577
CviAII	CATG	2 cut(s)	434, 451
CviJI	RGCY	6 cut(s)	5, 194, 298, 419, 430, 523
CviKI_1	RGCY	6 cut(s)	5, 194, 298, 419, 430, 523
CviQI	GTAC	2 cut(s)	425, 577
DdeI	CTNAG	2 cut(s)	198, 444
DpnI	GATC	2 cut(s)	35, 486
DpnII	GATC	2 cut(s)	33, 484
Eam1104I	CTCTTC	2 cut(s)	12, 258
EarI	CTCTTC	2 cut(s)	12, 258
Eco130I	CCWWGG	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	2 cut(s)	437, 454
FaqI	GGGAC	2 cut(s)	94, 176
FatI	CATG	2 cut(s)	433, 450
FauNDI	CATATG	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	437, 454
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	425, 441
Hpy188I	TCNGA	2 cut(s)	88, 591
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	2 cut(s)	425, 441
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	5 cut(s)	56, 476, 494, 549, 602
HpyCH4V	TGCA	2 cut(s)	295, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 389
HpyF3I	CTNAG	2 cut(s)	198, 444
Hsp92II	CATG	2 cut(s)	437, 454
Kzo9I	GATC	2 cut(s)	33, 484
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	2 cut(s)	258, 317
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	2 cut(s)	63, 379
MaeI	CTAG	1 cut(s)	536
MalI	GATC	2 cut(s)	35, 486
MboI	GATC	2 cut(s)	33, 484
MboII	GAAGA	1 cut(s)	275
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	5 cut(s)	44, 66, 113, 123, 595
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	24, 94, 154, 159, 199, 227, 351, 439, 513
MseI	TTAA	1 cut(s)	594
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	254, 389
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	2 cut(s)	33, 484
NlaIII	CATG	2 cut(s)	437, 454
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PpuMI	RGGWCCY	1 cut(s)	81
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	81
PspPPI	RGGWCCY	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	297
RsaI	GTAC	2 cut(s)	426, 578
RsaNI	GTAC	2 cut(s)	425, 577
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	2 cut(s)	33, 484
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	86, 196, 210, 247, 300, 432, 541
SfaNI	GCATC	2 cut(s)	63, 379
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	5 cut(s)	44, 66, 113, 123, 595
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	5 cut(s)	56, 476, 494, 549, 602
TasI	AATT	5 cut(s)	44, 66, 113, 123, 595
TatI	WGTACW	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	3 cut(s)	172, 479, 499
TseI	GCWGC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	239, 338, 392
TspRI	CASTG	3 cut(s)	172, 479, 499
VpaK11BI	GGWCC	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	454
XmaJI	CCTAGG	1 cut(s)	535
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.