Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

4924829 .. 4926877

Gene Structure 2049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG049800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTACAGGGACAAAGTAATCTTATGGCTATTCGTTCTGTGCTCGGAAAGCTGCCCAAGATTTGTGAATATGAAAGACTTATGATTGGGACATATGAAGGTATCAAACATAATAAAGCCCTTACTGCTCTTTGTCCTTTTCGGGTCCATGAAAATCATGTTCCCGTGCCCGTGAAAGACCAGATTAAGACACAGGGATTGATTTATCACATGGAGTTGGGAGGACTGGGGCCTGCACGTTTTGCCGTCGAAGAGTTCAACAAGCAAAAGAAATCCCAACTGCAGTTTGTGAGAGTGGTCAAGTTTTTGAGAGTGGATAGAAGCTGCAGAATGAACCTGCAGCGTTGGGATTTAAATTATTGTCATTGTTTGTATGCTCTAATATTGGAGGCAATTGATGCTGCCGGCGTGGTCAAATTCTACCAAGCATGTGTTAGGCTTCATGACTTAACTGAGGGCTTGTGGTTGGAAGAATTCTTGGTTTTCTCTGATAATGGAGACGAGCGTATGCGACTATATCATCACCTAGGTAACTATACATCCATGGCGTATAAGGCATGTTGCTTTGATTATGTATATTATAAGAGACTAAATGTCATGAGTCCCTGTGATGGGGGTCATGAGTCCCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

211

Amino Acids

24.43

Weight (kDa)

8.52

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	416, 473
AfiI	CCNNNNNNNGG	2 cut(s)	611, 612
AgsI	TTSAA	1 cut(s)	259
AhdI	GACNNNNNGTC	1 cut(s)	593
AluBI	AGCT	2 cut(s)	52, 324
AluI	AGCT	2 cut(s)	52, 324
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	492, 580
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	4 cut(s)	52, 324, 340, 401
ApoI	RAATTY	2 cut(s)	416, 473
AspA2I	CCTAGG	1 cut(s)	526
AspS9I	GGNCC	2 cut(s)	145, 230
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	145
AvrII	CCTAGG	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	39, 311, 352, 388
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	492, 580
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	3 cut(s)	281, 325, 338
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	4 cut(s)	53, 325, 341, 402
BlnI	CCTAGG	1 cut(s)	526
BlsI	GCNGC	4 cut(s)	54, 326, 342, 403
Bme18I	GGWCC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	145, 230
BmiI	GGNNCC	2 cut(s)	146, 231
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	526, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 612
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	526, 543
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	2 cut(s)	611, 612
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	39, 311, 352, 388
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	4 cut(s)	24, 103, 588, 610
BslI	CCNNNNNNNGG	2 cut(s)	611, 612
BsmAI	GTCTC	2 cut(s)	492, 580
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	4 cut(s)	24, 103, 588, 610
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	45, 171
Bsp19I	CCATGG	1 cut(s)	543
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	445
BspHI	TCATGA	3 cut(s)	442, 597, 619
BspLI	GGNNCC	2 cut(s)	146, 231
BspMAI	CTGCAG	3 cut(s)	285, 329, 342
BspMI	ACCTGC	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	526, 543
BssT1I	CCWWGG	2 cut(s)	526, 543
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	2 cut(s)	242, 398
BstC8I	GCNNGC	2 cut(s)	234, 406
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	539
BstMAI	GTCTC	2 cut(s)	492, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 125, 242, 398, 554
BstNSI	RCATGY	2 cut(s)	432, 561
BstSFI	CTRYAG	3 cut(s)	281, 325, 338
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	39, 311, 352, 388
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	234, 406
CciI	TCATGA	3 cut(s)	442, 597, 619
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	145, 230
CviAII	CATG	9 cut(s)	149, 158, 211, 429, 443, 544, 558, 598, 620
CviJI	RGCY	7 cut(s)	29, 52, 119, 232, 324, 439, 459
CviKI_1	RGCY	7 cut(s)	29, 52, 119, 232, 324, 439, 459
DdeI	CTNAG	1 cut(s)	453
DraI	TTTAAA	1 cut(s)	354
DriI	GACNNNNNGTC	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	246
Eam1105I	GACNNNNNGTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	526, 543
Eco47I	GGWCC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	473
EcoT14I	CCWWGG	2 cut(s)	526, 543
ErhI	CCWWGG	2 cut(s)	526, 543
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	9 cut(s)	152, 161, 214, 432, 446, 547, 561, 601, 623
FaqI	GGGAC	4 cut(s)	24, 103, 588, 610
FatI	CATG	9 cut(s)	148, 157, 210, 428, 442, 543, 557, 597, 619
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	53, 325, 341, 402
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	4 cut(s)	53, 325, 341, 402
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	4 cut(s)	53, 325, 341, 402
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	9 cut(s)	152, 161, 214, 432, 446, 547, 561, 601, 623
HinfI	GANTC	2 cut(s)	601, 623
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	515
Hpy188I	TCNGA	2 cut(s)	47, 490
Hpy188III	TCNNGA	3 cut(s)	443, 598, 620
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	236, 283, 327, 340
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 125, 242, 398, 554
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	9 cut(s)	152, 161, 214, 432, 446, 547, 561, 601, 623
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
LpnPI	CCDG	7 cut(s)	179, 194, 212, 246, 350, 418, 619
Lsp1109I	GCAGC	4 cut(s)	39, 311, 352, 388
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	3, 530
MboII	GAAGA	2 cut(s)	263, 482
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	2 cut(s)	45, 171
MluCI	AATT	4 cut(s)	355, 393, 416, 473
MlyI	GAGTC	2 cut(s)	610, 632
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	3 cut(s)	215, 382, 448
MroNI	GCCGGC	1 cut(s)	404
MseI	TTAA	3 cut(s)	186, 353, 449
MspI	CCGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	5 cut(s)	49, 125, 242, 398, 554
NaeI	GCCGGC	1 cut(s)	406
NcoI	CCATGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	94
NgoMIV	GCCGGC	1 cut(s)	404
NlaIII	CATG	9 cut(s)	152, 161, 214, 432, 446, 547, 561, 601, 623
NlaIV	GGNNCC	2 cut(s)	146, 231
NspI	RCATGY	2 cut(s)	432, 561
PagI	TCATGA	3 cut(s)	442, 597, 619
PdiI	GCCGGC	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	54, 326, 342, 403
PleI	GAGTC	2 cut(s)	609, 631
PpsI	GAGTC	2 cut(s)	609, 631
PsiI	TTATAA	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	146, 231
PspPI	GGNCC	2 cut(s)	145, 230
PstI	CTGCAG	3 cut(s)	285, 329, 342
SaqAI	TTAA	3 cut(s)	186, 353, 449
SatI	GCNGC	4 cut(s)	53, 325, 341, 402
Sau96I	GGNCC	2 cut(s)	145, 230
SchI	GAGTC	2 cut(s)	610, 632
SduI	GDGCHC	2 cut(s)	45, 171
SetI	ASST	7 cut(s)	54, 103, 241, 326, 339, 528, 532
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	3 cut(s)	281, 325, 338
SinI	GGWCC	1 cut(s)	145
SmiI	ATTTAAAT	1 cut(s)	354
Sse9I	AATT	4 cut(s)	355, 393, 416, 473
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	1 cut(s)	527
StyI	CCWWGG	2 cut(s)	526, 543
SwaI	ATTTAAAT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	355, 393, 416, 473
Tru1I	TTAA	3 cut(s)	186, 353, 449
Tru9I	TTAA	3 cut(s)	186, 353, 449
TseI	GCWGC	4 cut(s)	52, 324, 340, 401
TspDTI	ATGAA	5 cut(s)	87, 111, 165, 347, 431
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	416, 473
XceI	RCATGY	2 cut(s)	432, 561
XmaJI	CCTAGG	1 cut(s)	526
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.