Rmu_co8510555.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8510555.1
Physical Location & Seq
Reverse (-)
1540 .. 2913
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8510555.1_g000002.1.cds

Sequence Viewer

Length: 318 bp
atgtttcctagagaactgactagaggttcaaacgtgcggcaggtgagcagagaaaatgttaaatgggacaaacggaacacagaaaagaactctgagatatactggaatcaaattgaaaagcgagaacagaattcggatgcaaagaaacagaaagaaggtgaaaatgatgaggaagaggacgaagatgcggatgcggaagaggaggaagatgaggaccctagtgatgatgattatgctcagaacatagactttgatgacgatgaggatgattttaatgtagacgatggtgatgatgaacctcttttggaggaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.49

Weight (kDa)

4.05

Isoelectric Point (pI)

68.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 279
AciI CCGC 3 cut(s) 37, 188, 194
AcsI RAATTY 1 cut(s) 130
AgsI TTSAA 2 cut(s) 30, 116
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 55, 170, 299
AvaII GGWCC 1 cut(s) 214
BccI CCATC 1 cut(s) 278
BfaI CTAG 3 cut(s) 9, 21, 219
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 3 cut(s) 127, 175, 181
Bse1I ACTGG 1 cut(s) 107
BseGI GGATG 3 cut(s) 142, 196, 271
BseMII CTCAG 2 cut(s) 84, 251
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BspACI CCGC 3 cut(s) 37, 188, 194
BspCNI CTCAG 2 cut(s) 85, 250
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 107
Bst6I CTCTTC 2 cut(s) 168, 192
BstDEI CTNAG 2 cut(s) 93, 237
BstF5I GGATG 3 cut(s) 142, 196, 271
BtsCI GGATG 3 cut(s) 142, 196, 271
BveI ACCTGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 93, 237
Eam1104I CTCTTC 2 cut(s) 168, 192
EarI CTCTTC 2 cut(s) 168, 192
Eco47I GGWCC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 130
FaiI YATR 3 cut(s) 100, 234, 245
FaqI GGGAC 1 cut(s) 80
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 3 cut(s) 149, 203, 278
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 3 cut(s) 9, 21, 219
GluI GCNGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 106
HphI GGTGA 3 cut(s) 55, 170, 299
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 94, 136, 240
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 93, 237
HpySE526I ACGT 1 cut(s) 33
LpnPI CCDG 2 cut(s) 26, 88
LweI GCATC 3 cut(s) 127, 175, 181
MaeI CTAG 3 cut(s) 9, 21, 219
MaeII ACGT 1 cut(s) 33
MboII GAAGA 4 cut(s) 185, 194, 209, 218
MluCI AATT 2 cut(s) 111, 130
MnlI CCTC 9 cut(s) 17, 163, 169, 193, 196, 205, 256, 301, 309
MseI TTAA 2 cut(s) 60, 273
NlaIV GGNNCC 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
SaqAI TTAA 2 cut(s) 60, 273
SatI GCNGC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 214
SetI ASST 5 cut(s) 28, 36, 45, 160, 301
SfaNI GCATC 3 cut(s) 127, 175, 181
SgeI CNNG 7 cut(s) 21, 33, 46, 53, 115, 134, 231
SinI GGWCC 1 cut(s) 214
Sse9I AATT 2 cut(s) 111, 130
SsiI CCGC 3 cut(s) 37, 188, 194
SspMI CTAG 3 cut(s) 9, 21, 219
TaiI ACGT 1 cut(s) 36
TasI AATT 2 cut(s) 111, 130
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 60, 273
Tru9I TTAA 2 cut(s) 60, 273
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 3 cut(s) 9, 21, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.