RchiOBHm_Chr6g0253151

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
8300506 .. 8303081
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22699

Sequence Viewer

Length: 570 bp
ATGGCTATTCGTTCTGTGCTCGGAAAGCTGCCCAAGATTTGTGAATATGAAAGACTTATGATTGGGACATATGAAGGTATCAAACGTAATAAAGCCCTTACTGCTCTTTGTCCTTTTCGGGTCCATGAAAATCATGTTCCCGTGCCGGTGAAAGACCAGATTAAGACACAGGGATTGATTTATCACATGGAGTTGGGAGGACTGGGGCCTGCACGTTTTGCCGTCGAAGAGTTCAACAAGCAAAAGAAATCCCAACTGCAGTTTGTGAGAGTGGTCAAGTTTTTGAGAGTGGATAGAAGCTGCAGAATGAACCTGCAGCGTTGGGATTTAAATTCTTGTCATTGTTTGTATGCTCTAATATTGGAGGCAATTGATGCTGCCGGCGTGGTCAAATTCTACCAAGCATGCGTTAGGCTTCATGACTTAACTGAGGGCTTGTGGTTGGAAGAATTCTTGGTTTTCTCTGATAATGGAGACGAGCGTATGCGACTATATCATCACCTAGACAACTTTTATGCTGGATTACACGACGAGCATATCATACCTGGCAAAGGTGAAGTTGCAGCTTGA

Protein Analysis

189

Amino Acids

21.78

Weight (kDa)

8.2

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AcsI RAATTY 3 cut(s) 331, 392, 449
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 3 cut(s) 28, 300, 566
AluI AGCT 3 cut(s) 28, 300, 566
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 468
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 5 cut(s) 28, 300, 316, 377, 563
ApoI RAATTY 3 cut(s) 331, 392, 449
AspS9I GGNCC 2 cut(s) 121, 206
AsuHPI GGTGA 3 cut(s) 160, 491, 566
AvaII GGWCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 15, 287, 328, 364
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 3 cut(s) 257, 301, 314
BfuAI ACCTGC 1 cut(s) 321
BisI GCNGC 5 cut(s) 29, 301, 317, 378, 564
BlsI GCNGC 5 cut(s) 30, 302, 318, 379, 565
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 206
BmiI GGNNCC 2 cut(s) 122, 207
BmrFI CCNGG 1 cut(s) 546
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse118I RCCGGY 2 cut(s) 145, 380
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 546
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 4 cut(s) 15, 287, 328, 364
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 146, 381
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 1 cut(s) 468
BsmBI CGTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 21
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 122, 207
BspMAI CTGCAG 3 cut(s) 261, 305, 318
BspMI ACCTGC 1 cut(s) 321
BsrFI RCCGGY 2 cut(s) 145, 380
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 2 cut(s) 145, 380
Bst2UI CCWGG 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 2 cut(s) 218, 374
BstC8I GCNNGC 3 cut(s) 210, 382, 406
BstDEI CTNAG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 549
BstMAI GTCTC 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 25, 101, 218, 374
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 544
BstSFI CTRYAG 3 cut(s) 257, 301, 314
BstV1I GCAGC 4 cut(s) 15, 287, 328, 364
BsuRI GGCC 1 cut(s) 208
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 210, 382, 406
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 2 cut(s) 145, 380
Cfr13I GGNCC 2 cut(s) 121, 206
CviAII CATG 5 cut(s) 125, 134, 187, 405, 419
CviJI RGCY 8 cut(s) 5, 28, 95, 208, 300, 415, 435, 566
CviKI_1 RGCY 8 cut(s) 5, 28, 95, 208, 300, 415, 435, 566
DdeI CTNAG 1 cut(s) 429
DraI TTTAAA 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 468
FaeI CATG 5 cut(s) 128, 137, 190, 408, 422
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 124, 133, 186, 404, 418
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 5 cut(s) 29, 301, 317, 378, 564
Fsp4HI GCNGC 5 cut(s) 29, 301, 317, 378, 564
FspBI CTAG 1 cut(s) 503
GluI GCNGC 5 cut(s) 29, 301, 317, 378, 564
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 146, 381
Hin1II CATG 5 cut(s) 128, 137, 190, 408, 422
HpaII CCGG 2 cut(s) 146, 381
HphI GGTGA 3 cut(s) 160, 491, 566
Hpy188I TCNGA 2 cut(s) 23, 466
Hpy188III TCNNGA 1 cut(s) 419
Hpy99I CGWCG 2 cut(s) 227, 533
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 2 cut(s) 85, 214
HpyCH4V TGCA 5 cut(s) 212, 259, 303, 316, 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 101, 218, 374
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 2 cut(s) 85, 214
Hsp92II CATG 5 cut(s) 128, 137, 190, 408, 422
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Lsp1109I GCAGC 4 cut(s) 15, 287, 328, 364
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 503
MaeII ACGT 2 cut(s) 85, 214
MboII GAAGA 2 cut(s) 239, 458
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 331, 369, 392, 449
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 3 cut(s) 191, 358, 424
MroNI GCCGGC 1 cut(s) 380
MseI TTAA 3 cut(s) 162, 329, 425
MspI CCGG 2 cut(s) 146, 381
MspR9I CCNGG 1 cut(s) 546
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 25, 101, 218, 374
NaeI GCCGGC 1 cut(s) 382
NdeI CATATG 1 cut(s) 70
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 5 cut(s) 128, 137, 190, 408, 422
NlaIV GGNNCC 2 cut(s) 122, 207
NspI RCATGY 1 cut(s) 408
PaeI GCATGC 1 cut(s) 408
PagI TCATGA 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 382
PkrI GCNGC 5 cut(s) 30, 302, 318, 379, 565
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 122, 207
PspPI GGNCC 2 cut(s) 121, 206
PstI CTGCAG 3 cut(s) 261, 305, 318
SaqAI TTAA 3 cut(s) 162, 329, 425
SatI GCNGC 5 cut(s) 29, 301, 317, 378, 564
Sau96I GGNCC 2 cut(s) 121, 206
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 3 cut(s) 257, 301, 314
SinI GGWCC 1 cut(s) 121
SmiI ATTTAAAT 1 cut(s) 330
SphI GCATGC 1 cut(s) 408
Sse9I AATT 4 cut(s) 331, 369, 392, 449
SspI AATATT 1 cut(s) 360
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 544
SwaI ATTTAAAT 1 cut(s) 330
TaiI ACGT 2 cut(s) 88, 217
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 331, 369, 392, 449
Tru1I TTAA 3 cut(s) 162, 329, 425
Tru9I TTAA 3 cut(s) 162, 329, 425
TseI GCWGC 5 cut(s) 28, 300, 316, 377, 563
TspDTI ATGAA 5 cut(s) 63, 87, 141, 323, 407
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 3 cut(s) 331, 392, 449
XceI RCATGY 1 cut(s) 408
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.