Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Forward (+)

83120564 .. 83124385

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG527500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTGGTGGTCGACACATCGTGCTGGTTCACAAGCAAACAGGCTCCAGCAGCCGGCGATTGGTTCAATCGGATTTCGCGGGTCCACATCCATGCACGGCTGAAAGCCTCCAATCGTGGTGGTGTGGTTTGCGATTTGGATGGCGGGATTGGAGGTTTGCAGGATCTTCAACGGGTTGGAGAGTTGGGATGGAAATGGGTTGCGGGTTTAACGAGTTCAGGTGGGTGTTGGCCATGGTTGTTGCGTACTTGGATGGAGGTGGGTTGCGGCTTTGGCTGGCGCGCGGGTAGCGGTAGTGTGATGGCGGCGGTGGAAGTGGTGGTAGGGTTGCCGGGACACCTTTGGGCCTGGAATGTGGGATGCTGTTCTACATTTCAAGAGACTATGGCTCTTCGTTCTGTGCTTGGAAAGATGGCGAGTACTATGACTAGTAGTAAATGTATTCACAAAAATGGACGTCTAGTTTTGAGGATTGGGAGATTTGAAGCTATCAACCACAACCCCAATCACAGTAACAAAAATAAGGATGCGCCTTCGAGGGATGATCGTCTTACTTCTTATCTGTTTGAAATGGGGTGTTATGATGAAAATGGGGTTCGAATTCCAATGACTGTTAATAGGGGGATTGATTATCCTATGGATTTAGGGGGAATAGGACCTGCCCGTTTTGCTGTGGAAGAGTTCAACAAGCGAAAGAAAACCCAACTGCAACTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCATAGATGTATGTATGAACTAATATTGGATGCAGTTGATGCCGCTGGTGTGGTGAACTTTTACCTAGCATATGTTGAGATAGATGATATAAATGAGGGCATGTGGTTGGAAGAATTCAATATTTTCCGTGATAATGGATACCCTGCAAGACTATATCATCACCTAGACAACTTCTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

312

Amino Acids

35.2

Weight (kDa)

8.06

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	3 cut(s)	79, 282, 284
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	600, 866
AcyI	GRCGYC	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	2 cut(s)	247, 421
AfiI	CCNNNNNNNGG	2 cut(s)	53, 60
AgsI	TTSAA	8 cut(s)	67, 170, 377, 485, 569, 685, 871, 935
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	347, 731
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	230, 345
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	600, 866
ArsI	GACNNNNNNTTYG	1 cut(s)	911
AspLEI	GCGC	3 cut(s)	282, 284, 532
AspS9I	GGNCC	3 cut(s)	82, 345, 656
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	817, 905
AsuII	TTCGAA	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	82, 656
BalI	TGGCCA	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	5 cut(s)	134, 183, 247, 295, 406
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	349, 733
BciVI	GTATCC	1 cut(s)	884
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	4 cut(s)	429, 461, 818, 917
BfuAI	ACCTGC	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	884
BisI	GCNGC	5 cut(s)	51, 268, 306, 743, 795
BlsI	GCNGC	5 cut(s)	52, 269, 307, 744, 796
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	333, 349, 733
Bme18I	GGWCC	2 cut(s)	82, 656
BmgT120I	GGNCC	3 cut(s)	82, 345, 656
BmiI	GGNNCC	2 cut(s)	45, 83
BmrFI	CCNGG	3 cut(s)	333, 349, 733
BmsI	GCATC	4 cut(s)	350, 517, 772, 781
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	598
BpuMI	CCSGG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 60
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	349, 733
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	9 cut(s)	87, 145, 194, 258, 365, 532, 547, 741, 787
BseLI	CCNNNNNNNGG	2 cut(s)	53, 60
BsePI	GCGCGC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	743
Bsh1236I	CGCG	3 cut(s)	79, 282, 284
BshFI	GGCC	2 cut(s)	232, 347
BsiSI	CCGG	2 cut(s)	54, 332
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	53, 60
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	232, 347
Bsp119I	TTCGAA	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	163, 544
Bsp19I	CCATGG	1 cut(s)	233
BspANI	GGCC	2 cut(s)	232, 347
BspFNI	CGCG	3 cut(s)	79, 282, 284
BspLI	GGNNCC	2 cut(s)	45, 83
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	396
BspT104I	TTCGAA	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	233
BssHII	GCGCGC	1 cut(s)	280
BssMI	GATC	2 cut(s)	163, 544
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	349, 733
Bst4CI	ACNGT	2 cut(s)	512, 613
Bst6I	CTCTTC	2 cut(s)	396, 672
BstACI	GRCGYC	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	55, 278, 282
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	9 cut(s)	87, 145, 194, 258, 365, 532, 547, 741, 787
BstFNI	CGCG	3 cut(s)	79, 282, 284
BstHHI	GCGC	3 cut(s)	282, 284, 532
BstKTI	GATC	2 cut(s)	166, 547
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	163, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 273, 288, 668, 791
BstNI	CCWGG	2 cut(s)	349, 733
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	331, 347, 731
BstUI	CGCG	3 cut(s)	79, 282, 284
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	884
BsuRI	GGCC	2 cut(s)	232, 347
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	9 cut(s)	87, 145, 194, 258, 365, 532, 547, 741, 787
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	3 cut(s)	55, 278, 282
CfoI	GCGC	3 cut(s)	282, 284, 532
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	82, 345, 656
Csp6I	GTAC	2 cut(s)	246, 420
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	3 cut(s)	92, 234, 853
CviQI	GTAC	2 cut(s)	246, 420
DpnI	GATC	2 cut(s)	165, 546
DpnII	GATC	2 cut(s)	163, 544
DraIII	CACNNNGTG	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	396, 672
EarI	CTCTTC	2 cut(s)	396, 672
Eco130I	CCWWGG	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	82, 656
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	2 cut(s)	600, 866
EcoRII	CCWGG	2 cut(s)	347, 731
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	3 cut(s)	95, 237, 856
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	91, 233, 852
FauI	CCCGC	4 cut(s)	72, 137, 196, 277
FauNDI	CATATG	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	51, 268, 306, 743, 795
FokI	GGATG	9 cut(s)	74, 152, 201, 265, 372, 539, 554, 748, 794
Fsp4HI	GCNGC	5 cut(s)	51, 268, 306, 743, 795
FspBI	CTAG	4 cut(s)	429, 461, 818, 917
GlaI	GCGC	3 cut(s)	281, 283, 531
GluI	GCNGC	5 cut(s)	51, 268, 306, 743, 795
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	232, 347
HapII	CCGG	2 cut(s)	54, 332
HhaI	GCGC	3 cut(s)	282, 284, 532
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	95, 237, 856
Hin6I	GCGC	3 cut(s)	280, 282, 530
HinP1I	GCGC	3 cut(s)	280, 282, 530
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	54, 332
HphI	GGTGA	2 cut(s)	817, 905
Hpy166II	GTNNAC	4 cut(s)	13, 30, 85, 808
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	4 cut(s)	13, 30, 85, 808
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	2 cut(s)	512, 613
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	6 cut(s)	95, 160, 709, 724, 785, 899
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 273, 288, 668, 791
HpySE526I	ACGT	1 cut(s)	457
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	95, 237, 856
HspAI	GCGC	3 cut(s)	280, 282, 530
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	163, 544
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	4 cut(s)	350, 517, 772, 781
MaeI	CTAG	4 cut(s)	429, 461, 818, 917
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	2 cut(s)	165, 546
MboI	GATC	2 cut(s)	163, 544
MboII	GAAGA	4 cut(s)	158, 383, 689, 875
MflI	RGATCY	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	2 cut(s)	600, 866
MluNI	TGGCCA	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	157, 840
MnlI	CCTC	6 cut(s)	118, 146, 250, 462, 531, 841
Mox20I	TGGCCA	1 cut(s)	232
MroNI	GCCGGC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	2 cut(s)	209, 615
MslI	CAYNNNNRTG	2 cut(s)	90, 450
Msp20I	TGGCCA	1 cut(s)	232
MspA1I	CMGCKG	2 cut(s)	745, 797
MspI	CCGG	2 cut(s)	54, 332
MspR9I	CCNGG	3 cut(s)	333, 349, 733
MvaI	CCWGG	2 cut(s)	349, 733
MvnI	CGCG	3 cut(s)	79, 282, 284
MwoI	GCNNNNNNNGC	5 cut(s)	50, 273, 288, 668, 791
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	233
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	2 cut(s)	163, 544
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	95, 237, 856
NlaIV	GGNNCC	2 cut(s)	45, 83
NspI	RCATGY	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	598
PauI	GCGCGC	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	55
PkrI	GCNGC	5 cut(s)	52, 269, 307, 744, 796
PpuMI	RGGWCCY	1 cut(s)	656
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	347, 731
PspGI	CCWGG	2 cut(s)	347, 731
PspN4I	GGNNCC	2 cut(s)	45, 83
PspPI	GGNCC	3 cut(s)	82, 345, 656
PspPPI	RGGWCCY	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	163
PteI	GCGCGC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	247, 421
RsaNI	GTAC	2 cut(s)	246, 420
RseI	CAYNNNNRTG	2 cut(s)	90, 450
SalI	GTCGAC	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	209, 615
SatI	GCNGC	5 cut(s)	51, 268, 306, 743, 795
Sau3AI	GATC	2 cut(s)	163, 544
Sau96I	GGNCC	3 cut(s)	82, 345, 656
ScaI	AGTACT	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	333, 349, 733
SfaNI	GCATC	4 cut(s)	350, 517, 772, 781
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	2 cut(s)	82, 656
SmiMI	CAYNNNNRTG	2 cut(s)	90, 450
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	2 cut(s)	600, 866
SspI	AATATT	2 cut(s)	777, 874
SspMI	CTAG	4 cut(s)	429, 461, 818, 917
StyD4I	CCNGG	3 cut(s)	331, 347, 731
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	512, 613
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	12, 536, 598
TasI	AATT	2 cut(s)	600, 866
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	4 cut(s)	270, 308, 745, 797
Tru1I	TTAA	2 cut(s)	209, 615
Tru9I	TTAA	2 cut(s)	209, 615
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	600, 752, 783
TspGWI	ACGGA	1 cut(s)	869
VpaK11BI	GGWCC	2 cut(s)	82, 656
XapI	RAATTY	2 cut(s)	600, 866
XceI	RCATGY	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	4 cut(s)	429, 461, 818, 917
ZraI	GACGTC	1 cut(s)	458
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.