Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

45085089 .. 45087383

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTCTTCGTTGCATGCTTGGAAAGCTGGGCAACAATAATAAATTTCTCTGCTATAAAAGAAGAGCTATGATGCTTGGGACCTTTGAAGTTATCAAACACAAAAATAAGGAATTGCTTTCAACGGCTTTTCCAACTCATTCCTCTCCTCTTCATTTTCAGGACGTTGAATTTCGTGCCCCCGTACACATAACTACTAGGAAAGAGGGTTGGTATTATCATATGGAATTAGGACTAAGACCTGCCCGTTTCGCATTAGAAGAGTTCAACAAGATAAAGAAAGCCCAACTGCAGCTTTTGAGAGTGGTGGGACTCTGGATGAAGCCGCAGGGTTATACTCCTCGTAATCCTTGTCATTGTTTATATGTTGTAATAATGGAGGCAGTTGATCCCGATGGTGTGGCACTACTTTACCAAGCACATATTCAGCTCCATGATTTAAATGAGGGCATGTGGTTGGAAGCATTCTATTGCTGCTGTAAACTGATAGGATATCAGAGACTATATCATTACCTAGTTCACTCATTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

177

Amino Acids

20.76

Weight (kDa)

9.17

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	2 cut(s)	44, 170
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	89, 123, 170, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	4 cut(s)	28, 68, 295, 430
AluI	AGCT	4 cut(s)	28, 68, 295, 430
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	292, 474
ApoI	RAATTY	2 cut(s)	44, 170
AspS9I	GGNCC	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	304, 461
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	198, 515
BfmI	CTRYAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	3 cut(s)	293, 326, 475
BlsI	GCNGC	3 cut(s)	294, 327, 476
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	63
BseGI	GGATG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	138, 330
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	304, 461
BseYI	CCCAGC	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	94, 324
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	94, 324
BsmI	GAATGC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	2 cut(s)	12, 58
BssMI	GATC	1 cut(s)	388
Bst6I	CTCTTC	4 cut(s)	12, 58, 156, 255
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 251
BstNSI	RCATGY	2 cut(s)	19, 454
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	304, 461
BtsCI	GGATG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	3 cut(s)	16, 434, 451
CviJI	RGCY	8 cut(s)	5, 28, 68, 128, 284, 295, 325, 430
CviKI_1	RGCY	8 cut(s)	5, 28, 68, 128, 284, 295, 325, 430
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	4 cut(s)	12, 58, 156, 255
EarI	CTCTTC	4 cut(s)	12, 58, 156, 255
Eco32I	GATATC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	494
FaeI	CATG	3 cut(s)	19, 437, 454
FaqI	GGGAC	2 cut(s)	94, 324
FatI	CATG	3 cut(s)	15, 433, 450
FauNDI	CATATG	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	293, 326, 475
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	293, 326, 475
FspBI	CTAG	2 cut(s)	198, 515
GluI	GCNGC	3 cut(s)	293, 326, 475
GsaI	CCCAGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	19, 437, 454
HinfI	GANTC	1 cut(s)	312
Hpy166II	GTNNAC	3 cut(s)	187, 482, 520
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	3 cut(s)	161, 316, 392
Hpy8I	GTNNAC	3 cut(s)	187, 482, 520
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	15, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 251
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	19, 437, 454
Kzo9I	GATC	1 cut(s)	388
LguI	GCTCTTC	2 cut(s)	12, 58
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	5 cut(s)	14, 146, 255, 301, 314
Lsp1109I	GCAGC	2 cut(s)	304, 461
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	2 cut(s)	198, 515
MaeII	ACGT	1 cut(s)	165
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	3 cut(s)	75, 143, 272
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	44, 113, 170, 227
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	158, 438
MnlI	CCTC	6 cut(s)	154, 159, 199, 351, 373, 439
MseI	TTAA	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	25, 251
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	19, 437, 454
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	2 cut(s)	19, 454
PaeI	GCATGC	1 cut(s)	19
PciSI	GCTCTTC	2 cut(s)	12, 58
PctI	GAATGC	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	294, 327, 476
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	81
PspPPI	RGGWCCY	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	294
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SapI	GCTCTTC	2 cut(s)	12, 58
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	3 cut(s)	293, 326, 475
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	30, 70, 86, 168, 244, 297, 432, 516
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	81
SmiI	ATTTAAAT	1 cut(s)	441
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	4 cut(s)	44, 113, 170, 227
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	2 cut(s)	198, 515
SwaI	ATTTAAAT	1 cut(s)	441
TaiI	ACGT	1 cut(s)	168
TasI	AATT	4 cut(s)	44, 113, 170, 227
TauI	GCSGC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TseI	GCWGC	2 cut(s)	292, 474
TspDTI	ATGAA	2 cut(s)	143, 335
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	2 cut(s)	44, 170
XceI	RCATGY	2 cut(s)	19, 454
XspI	CTAG	2 cut(s)	198, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.