Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000459

Physical Location & Seq

Genomic Coordinates Reverse (-)

2620997 .. 2622397

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGCTTGGGCATACTGTGGTTAAAGTGCTGCCGTTCTGGATTATGCTTCGGTATAGTTTCGGACAGAGGTTTCTTTGATACTAATGAGCGCAGAAGCATGTTCAAAACCTTGAAAAAAAACCATGAGGCCATGGTTGTTCGTTCTGTGCTTGGAAAGCTGGGTAGGAGTAGATTTATTCACAACAATGAAAGACTTACCATGGCTGGGAGCTCTCCTACTGTTTGTTCCTCTCCTCATCATCCTTTTGATTATTATGGGGTCGTCCATGATCAAAACAAAGCGGATCAAAAAAGAAACCCGTTTCTTCATGGATCGCTTATGAAAAAGCCAGTTTATTCTCATTTGGATTTTGGAGGACTAGGACCTGCTCGTTTTGCCACCGAAGAGTTGAGGAAGAAAATGGTTTATTTTTTTCTTTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

143

Amino Acids

16.23

Weight (kDa)

9.87

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca	FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica	MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica	Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis	pycom02g25390 pycom08g14650
rosa_chinensis	RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata	RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora	Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa	Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha	Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana	Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	294, 322
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	106, 115
AluBI	AGCT	2 cut(s)	160, 213
AluI	AGCT	2 cut(s)	160, 213
Alw21I	GWGCWC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	294, 322
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	18
BclI	TGATCA	1 cut(s)	271
BfaI	CTAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	132, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	132, 201
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	2 cut(s)	160, 206
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	207
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	271, 286, 314
Bsp19I	CCATGG	2 cut(s)	132, 201
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	294, 322
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	132, 201
BssMI	GATC	3 cut(s)	271, 286, 314
BssT1I	CCWWGG	2 cut(s)	132, 201
Bst4CI	ACNGT	2 cut(s)	18, 223
Bst6I	CTCTTC	1 cut(s)	381
BstDSI	CCRYGG	2 cut(s)	132, 201
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	274, 289, 317
BstMBI	GATC	3 cut(s)	271, 286, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 377
BstNSI	RCATGY	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	2 cut(s)	132, 201
BtsCI	GGATG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	365
CviAII	CATG	6 cut(s)	100, 125, 133, 202, 269, 311
CviJI	RGCY	6 cut(s)	6, 131, 160, 206, 213, 331
CviKI_1	RGCY	6 cut(s)	6, 131, 160, 206, 213, 331
DpnI	GATC	3 cut(s)	273, 288, 316
DpnII	GATC	3 cut(s)	271, 286, 314
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	132, 201
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	365
EcoT14I	CCWWGG	2 cut(s)	132, 201
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	132, 201
FaeI	CATG	6 cut(s)	103, 128, 136, 205, 272, 314
FatI	CATG	6 cut(s)	99, 124, 132, 201, 268, 310
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	31
GsaI	CCCAGC	2 cut(s)	164, 210
HaeIII	GGCC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	103, 128, 136, 205, 272, 314
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	39
HpyCH4III	ACNGT	2 cut(s)	18, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 377
Hsp92II	CATG	6 cut(s)	103, 128, 136, 205, 272, 314
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	271, 286, 314
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	5 cut(s)	24, 146, 192, 345, 381
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	362
MalI	GATC	3 cut(s)	273, 288, 316
MboI	GATC	3 cut(s)	271, 286, 314
MboII	GAAGA	3 cut(s)	299, 398, 409
MhlI	GDGCHC	1 cut(s)	215
MnlI	CCTC	6 cut(s)	62, 121, 241, 246, 350, 387
MseI	TTAA	2 cut(s)	23, 427
MslI	CAYNNNNRTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	157, 377
NcoI	CCATGG	2 cut(s)	132, 201
NdeII	GATC	3 cut(s)	271, 286, 314
NlaIII	CATG	6 cut(s)	103, 128, 136, 205, 272, 314
NspI	RCATGY	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	365
PspFI	CCCAGC	2 cut(s)	160, 206
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	23, 427
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	3 cut(s)	271, 286, 314
Sau96I	GGNCC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	5 cut(s)	73, 113, 162, 215, 370
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	186
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	132, 201
TaaI	ACNGT	2 cut(s)	18, 223
Tru1I	TTAA	2 cut(s)	23, 427
Tru9I	TTAA	2 cut(s)	23, 427
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	3 cut(s)	204, 299, 338
VpaK11BI	GGWCC	1 cut(s)	365
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.