RLG00000020015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000459
Physical Location & Seq
Forward (+)
60036597 .. 60038674
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020015

Sequence Viewer

Length: 690 bp
ATGGGAAAACATGTCACTGCGGTGGAAACAAATAAGAAGGCTGGAACCAAAGGGGCTGAAGATAGTTTGGACAAGATCATGCTTAAACCTATGCACAGGTTAGAAAGAGAGAAAATGCAAGTCTTGGCAAAGGGAAACAATTATGAATATCGTACGCTTGAAAAGAAAAAGGGAAGAAACAATGTTACAGAATGTGAGAGCTTGGACAAAGGTTGGTATTATCATATGGAATTGGGAGGACTAAGACCTGCCCGTTTCGCATTGGAAGAGTTTGACAAGATAAAGAAAGCCCAACTGCAGCTTGTGAGAGTGGTGGGACTCTGGATGAAGCCGCAGGGTTATCCTCCTCATAATCCTTGTCATTGTTTATATGTTGTAATAATGGAGGGAGTTGATCCCGATGATGTGGCACTACTTTACCAAGCACATATTCAGCTCCATGATTTAAATGAGGGCATGTGGTTGGAAGCATTCTATCGCTGCTGTACTTCAATCATTTGCTTGAAACAGACAACTTCTATGACTCCATGTGACCTCAGAGGGCAGGACCAAAATGGTGTTGATGATGATCGATGGAAGATGGCAACCCTGAAAGGACTTTTGCTGTTATTGATGTTAAGCAAAGGTGAACCTGAGGCAGCTGTGTGCATCAATTACCATGTTAATAAAATGAAGCAGATCATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.28

Weight (kDa)

8.05

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01590 AT4G01590 AT4G01590 AT4G35685
fragaria_vesca FvH4_2g26230 FvH4_3g43010 FvH4_3g43011 FvH4_4g18161 FvH4_4g18202 FvH4_5g23500 FvH4_6g36040 FvH4_6g36040 FvH4_6g36040
malus_domestica MD08G1165000.v1.1 MD08G1171800.v1.1 MD15G1357300.v1.1 MD15G1382800.v1.1
prunus_persica Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G504500_v2.0.a1 Prupe.1G582300_v2.0.a1 Prupe.6G034400_v2.0.a1 Prupe.6G034600_v2.0.a1
pyrus_communis pycom02g25390 pycom08g14650
rosa_chinensis RchiOBHm_Chr2g0143271 RchiOBHm_Chr4g0422341 RchiOBHm_Chr6g0253151 RchiOBHm_Chr6g0294801
rosa_laevigata RLG00000007621 RLG00000011839 RLG00000020015 RLG00000020019 RLG00000020023 RLG00000036652 RLG00000036658
rosa_multiflora Rmu_co8140216.1_g000001 Rmu_co8510555.1_g000002 Rmu_sc0003323.1_g000013 Rmu_sc0003323.1_g000024 Rmu_sc0003323.1_g000031 Rmu_sc0013245.1_g000016 Rmu_sc0030690.1_g000001
rosa_roxburghii Rroxscaffold_1G00005030 Rroxscaffold_2G00101900 Rroxscaffold_2G00102030 Rroxscaffold_4G00318680 Rroxscaffold_5G00364400 Rroxscaffold_5G00364410 Rroxscaffold_7G00173000 Rroxscaffold_7G00212110
rosa_rugosa Rorug04G0179200 Rorug05G0451000 Rorug05G0451400.1 Rorug05G0451500 Rorug06G0246900
rosa_samantha Rh1AG104900 Rh1CG244000 Rh1DG126500 Rh2AG432700 Rh2CG418500 Rh4AG238500 Rh4BG241700 Rh4BG242000 Rh4CG253500 Rh4CG253600 Rh4DG237400 Rh5AG505300 Rh5AG505500 Rh5BG527000 Rh5BG527200 Rh5BG527500 Rh5CG551000 Rh5CG551300 Rh5CG551800 Rh5DG539300 Rh5DG539900 Rh6AG057300 Rh6AG360500 Rh6BG051900 Rh6BG367200 Rh6CG049800 Rh6CG374200 Rh6DG046000
rosa_wichuraiana Rw1G009810 Rw5G047080 Rw5G047100 Rw6G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AciI CCGC 2 cut(s) 20, 332
AclWI GGATC 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 154, 487
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 3 cut(s) 161, 492, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AleI CACNNNNGTG 1 cut(s) 20
AluBI AGCT 4 cut(s) 201, 301, 436, 641
AluI AGCT 4 cut(s) 201, 301, 436, 641
AlwI GGATC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 298, 480, 638
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 638
AvaII GGWCC 1 cut(s) 547
AxyI CCTNAGG 1 cut(s) 633
BbvI GCAGC 3 cut(s) 310, 467, 650
BccI CCATC 2 cut(s) 567, 574
BfmI CTRYAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 4 cut(s) 299, 332, 481, 639
BlsI GCNGC 4 cut(s) 300, 333, 482, 640
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 657
Bsa29I ATCGAT 1 cut(s) 571
BsaBI GATNNNNATC 1 cut(s) 567
Bse21I CCTNAGG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 567
BseCI ATCGAT 1 cut(s) 571
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 567
BseMII CTCAG 2 cut(s) 550, 624
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 3 cut(s) 310, 467, 650
BshVI ATCGAT 1 cut(s) 571
BsiWI CGTACG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 470
Bsp143I GATC 4 cut(s) 75, 394, 568, 678
BspACI CCGC 2 cut(s) 20, 332
BspCNI CTCAG 2 cut(s) 549, 625
BspDI ATCGAT 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 389
BssMI GATC 4 cut(s) 75, 394, 568, 678
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 242, 536, 633
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 4 cut(s) 78, 397, 571, 681
BstMBI GATC 4 cut(s) 75, 394, 568, 678
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNSI RCATGY 2 cut(s) 14, 460
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 310, 467, 650
Bsu15I ATCGAT 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 633
BsuTUI ATCGAT 1 cut(s) 571
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 547
ClaI ATCGAT 1 cut(s) 571
Csp6I GTAC 2 cut(s) 153, 486
CviAII CATG 6 cut(s) 11, 79, 440, 457, 528, 659
CviJI RGCY 8 cut(s) 41, 56, 201, 290, 301, 331, 436, 641
CviKI_1 RGCY 8 cut(s) 41, 56, 201, 290, 301, 331, 436, 641
CviQI GTAC 2 cut(s) 153, 486
DdeI CTNAG 3 cut(s) 242, 536, 633
DpnI GATC 4 cut(s) 77, 396, 570, 680
DpnII GATC 4 cut(s) 75, 394, 568, 678
DraI TTTAAA 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 633
FaeI CATG 6 cut(s) 14, 82, 443, 460, 531, 662
FaqI GGGAC 1 cut(s) 330
FatI CATG 6 cut(s) 10, 78, 439, 456, 527, 658
FauNDI CATATG 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 299, 332, 481, 639
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 4 cut(s) 299, 332, 481, 639
GluI GCNGC 4 cut(s) 299, 332, 481, 639
Hin1II CATG 6 cut(s) 14, 82, 443, 460, 531, 662
HinfI GANTC 2 cut(s) 318, 523
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 2 cut(s) 322, 398
Hpy8I GTNNAC 1 cut(s) 629
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 94, 118, 298, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 3 cut(s) 242, 536, 633
Hsp92II CATG 6 cut(s) 14, 82, 443, 460, 531, 662
Kzo9I GATC 4 cut(s) 75, 394, 568, 678
LmnI GCTCC 1 cut(s) 441
LpnPI CCDG 8 cut(s) 27, 82, 261, 307, 320, 530, 602, 645
Lsp1109I GCAGC 3 cut(s) 310, 467, 650
LweI GCATC 1 cut(s) 657
MaeIII GTNAC 3 cut(s) 13, 184, 530
MalI GATC 4 cut(s) 77, 396, 570, 680
MboI GATC 4 cut(s) 75, 394, 568, 678
MboII GAAGA 4 cut(s) 71, 186, 278, 589
MluCI AATT 3 cut(s) 139, 230, 652
MlyI GAGTC 2 cut(s) 312, 517
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 8 cut(s) 230, 354, 357, 379, 445, 533, 545, 628
MseI TTAA 4 cut(s) 84, 446, 617, 663
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 641
Mva1269I GAATGC 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeI CATATG 1 cut(s) 225
NdeII GATC 4 cut(s) 75, 394, 568, 678
NlaIII CATG 6 cut(s) 14, 82, 443, 460, 531, 662
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 13, 530
NspI RCATGY 2 cut(s) 14, 460
OliI CACNNNNGTG 1 cut(s) 20
PciI ACATGT 1 cut(s) 10
PctI GAATGC 1 cut(s) 470
Pfl23II CGTACG 1 cut(s) 152
PkrI GCNGC 4 cut(s) 300, 333, 482, 640
PleI GAGTC 2 cut(s) 312, 517
PpsI GAGTC 2 cut(s) 312, 517
PscI ACATGT 1 cut(s) 10
PspLI CGTACG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 2 cut(s) 154, 487
RsaNI GTAC 2 cut(s) 153, 486
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 4 cut(s) 84, 446, 617, 663
SatI GCNGC 4 cut(s) 299, 332, 481, 639
Sau3AI GATC 4 cut(s) 75, 394, 568, 678
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 312, 517
SfaNI GCATC 1 cut(s) 657
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 547
SmiI ATTTAAAT 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 139, 230, 652
SsiI CCGC 2 cut(s) 20, 332
SwaI ATTTAAAT 1 cut(s) 447
TaqI TCGA 2 cut(s) 571, 684
TasI AATT 3 cut(s) 139, 230, 652
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 334
Tru1I TTAA 4 cut(s) 84, 446, 617, 663
Tru9I TTAA 4 cut(s) 84, 446, 617, 663
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 2 cut(s) 13, 530
TseI GCWGC 3 cut(s) 298, 480, 638
Tsp45I GTSAC 2 cut(s) 13, 530
TspDTI ATGAA 3 cut(s) 159, 341, 686
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 547
XceI RCATGY 2 cut(s) 14, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.