Zinc ion binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 450 |
| AarI | CACCTGC | 1 cut(s) | 381 |
| Acc36I | ACCTGC | 1 cut(s) | 381 |
| AccB1I | GGYRCC | 1 cut(s) | 2311 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1587, 2033 |
| AccBSI | CCGCTC | 1 cut(s) | 1608 |
| AccI | GTMKAC | 2 cut(s) | 880, 1639 |
| AccII | CGCG | 2 cut(s) | 997, 1221 |
| AciI | CCGC | 6 cut(s) | 312, 995, 997, 1608, 1624, 2109 |
| AclWI | GGATC | 4 cut(s) | 21, 1055, 1068, 1091 |
| AcoI | YGGCCR | 1 cut(s) | 323 |
| AcsI | RAATTY | 4 cut(s) | 56, 1328, 1707, 2304 |
| AcuI | CTGAAG | 4 cut(s) | 876, 1327, 1472, 1503 |
| AcyI | GRCGYC | 1 cut(s) | 1162 |
| AfaI | GTAC | 6 cut(s) | 321, 337, 687, 1340, 1533, 2257 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 491, 1057, 1367, 1587, 2033, 2321 |
| AflIII | ACRYGT | 2 cut(s) | 565, 1219 |
| AgsI | TTSAA | 8 cut(s) | 92, 203, 717, 767, 1233, 1468, 2211, 2302 |
| AhlI | ACTAGT | 1 cut(s) | 1379 |
| AjnI | CCWGG | 6 cut(s) | 1067, 1373, 1580, 1726, 1829, 2203 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2175, 2207 |
| Alw21I | GWGCWC | 2 cut(s) | 729, 1036 |
| Alw26I | GTCTC | 6 cut(s) | 596, 598, 1362, 1409, 1927, 1939 |
| AlwI | GGATC | 4 cut(s) | 21, 1055, 1068, 1091 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1649 |
| AoxI | GGCC | 2 cut(s) | 323, 364 |
| ApeKI | GCWGC | 7 cut(s) | 512, 1424, 1755, 1826, 1884, 2219, 2222 |
| ApoI | RAATTY | 4 cut(s) | 56, 1328, 1707, 2304 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 887, 919 |
| AspS9I | GGNCC | 3 cut(s) | 290, 494, 647 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 5 cut(s) | 173, 764, 1615, 2096, 2193 |
| AvaII | GGWCC | 3 cut(s) | 290, 494, 647 |
| AxyI | CCTNAGG | 1 cut(s) | 557 |
| BaeGI | GKGCMC | 1 cut(s) | 2314 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 908, 941, 1765, 1798 |
| BamHI | GGATCC | 1 cut(s) | 1060 |
| BanI | GGYRCC | 1 cut(s) | 2311 |
| BanII | GRGCYC | 2 cut(s) | 729, 1036 |
| BbsI | GAAGAC | 4 cut(s) | 558, 697, 1157, 2169 |
| Bbv12I | GWGCWC | 2 cut(s) | 729, 1036 |
| BbvI | GCAGC | 7 cut(s) | 499, 1436, 1767, 1813, 1871, 2206, 2209 |
| BccI | CCATC | 6 cut(s) | 3, 245, 1017, 1423, 2035, 2099 |
| BceAI | ACGGC | 2 cut(s) | 338, 1714 |
| BciT130I | CCWGG | 6 cut(s) | 1069, 1375, 1582, 1728, 1831, 2205 |
| BciVI | GTATCC | 3 cut(s) | 842, 936, 1766 |
| BclI | TGATCA | 1 cut(s) | 1791 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 6 cut(s) | 596, 598, 1362, 1409, 1927, 1939 |
| BcuI | ACTAGT | 1 cut(s) | 1379 |
| BfaI | CTAG | 9 cut(s) | 6, 138, 207, 1005, 1266, 1380, 1814, 2031, 2063 |
| BfmI | CTRYAG | 5 cut(s) | 432, 877, 1251, 1850, 2223 |
| BfuAI | ACCTGC | 1 cut(s) | 381 |
| BfuI | GTATCC | 3 cut(s) | 842, 936, 1766 |
| BglII | AGATCT | 1 cut(s) | 1346 |
| BisI | GCNGC | 7 cut(s) | 513, 1425, 1756, 1827, 1885, 2220, 2223 |
| BlsI | GCNGC | 7 cut(s) | 514, 1426, 1757, 1828, 1886, 2221, 2224 |
| BmcAI | AGTACT | 1 cut(s) | 1340 |
| Bme1390I | CCNGG | 7 cut(s) | 101, 1069, 1375, 1582, 1728, 1831, 2205 |
| Bme18I | GGWCC | 3 cut(s) | 290, 494, 647 |
| BmgT120I | GGNCC | 3 cut(s) | 290, 494, 647 |
| BmiI | GGNNCC | 3 cut(s) | 1062, 1372, 2313 |
| BmrFI | CCNGG | 7 cut(s) | 101, 1069, 1375, 1582, 1728, 1831, 2205 |
| BmsI | GCATC | 4 cut(s) | 264, 759, 1003, 1972 |
| BpiI | GAAGAC | 4 cut(s) | 558, 697, 1157, 2169 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 788, 820, 1463, 1495 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2149 |
| BpuEI | CTTGAG | 2 cut(s) | 716, 883 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaAI | YACGTR | 2 cut(s) | 339, 566 |
| BsaHI | GRCGYC | 1 cut(s) | 1162 |
| BsaI | GGTCTC | 3 cut(s) | 596, 1362, 1409 |
| BsaJI | CCNNGG | 6 cut(s) | 490, 825, 995, 1056, 1401, 1727 |
| BsaWI | WCCGGW | 2 cut(s) | 292, 2314 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 491, 1057, 1367, 1587, 2033, 2321 |
| Bse1I | ACTGG | 2 cut(s) | 974, 1142 |
| Bse21I | CCTNAGG | 1 cut(s) | 557 |
| BseBI | CCWGG | 6 cut(s) | 1069, 1375, 1582, 1728, 1831, 2205 |
| BseDI | CCNNGG | 6 cut(s) | 490, 825, 995, 1056, 1401, 1727 |
| BseGI | GGATG | 7 cut(s) | 126, 151, 256, 301, 742, 1032, 1132 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 491, 1057, 1367, 1587, 2033, 2321 |
| BseMII | CTCAG | 4 cut(s) | 831, 948, 2129, 2163 |
| BseNI | ACTGG | 2 cut(s) | 974, 1142 |
| BseRI | GAGGAG | 1 cut(s) | 715 |
| BseSI | GKGCMC | 1 cut(s) | 2314 |
| BseXI | GCAGC | 7 cut(s) | 499, 1436, 1767, 1813, 1871, 2206, 2209 |
| BseYI | CCCAGC | 2 cut(s) | 1079, 1758 |
| BsgI | GTGCAG | 3 cut(s) | 409, 1443, 1477 |
| Bsh1236I | CGCG | 2 cut(s) | 997, 1221 |
| BshFI | GGCC | 2 cut(s) | 325, 366 |
| BshNI | GGYRCC | 1 cut(s) | 2311 |
| BsiHKAI | GWGCWC | 2 cut(s) | 729, 1036 |
| BsiSI | CCGG | 3 cut(s) | 100, 293, 2315 |
| BslFI | GGGAC | 4 cut(s) | 116, 922, 1490, 1537 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 491, 1057, 1367, 1587, 2033, 2321 |
| BsmAI | GTCTC | 6 cut(s) | 596, 598, 1362, 1409, 1927, 1939 |
| BsmFI | GGGAC | 4 cut(s) | 116, 922, 1490, 1537 |
| BsmI | GAATGC | 2 cut(s) | 170, 705 |
| BsnI | GGCC | 2 cut(s) | 325, 366 |
| Bso31I | GGTCTC | 3 cut(s) | 596, 1362, 1409 |
| Bsp1286I | GDGCHC | 3 cut(s) | 729, 1036, 2314 |
| Bsp143I | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| Bsp19I | CCATGG | 1 cut(s) | 490 |
| BspACI | CCGC | 6 cut(s) | 312, 995, 997, 1608, 1624, 2109 |
| BspANI | GGCC | 2 cut(s) | 325, 366 |
| BspCNI | CTCAG | 4 cut(s) | 832, 949, 2130, 2162 |
| BspFNI | CGCG | 2 cut(s) | 997, 1221 |
| BspLI | GGNNCC | 3 cut(s) | 1062, 1372, 2313 |
| BspMAI | CTGCAG | 1 cut(s) | 2227 |
| BspMI | ACCTGC | 1 cut(s) | 381 |
| BspPI | GGATC | 4 cut(s) | 21, 1055, 1068, 1091 |
| BspT107I | GGYRCC | 1 cut(s) | 2311 |
| BspTNI | GGTCTC | 3 cut(s) | 596, 1362, 1409 |
| BsrBI | CCGCTC | 1 cut(s) | 1608 |
| BsrI | ACTGG | 2 cut(s) | 974, 1142 |
| BssECI | CCNNGG | 6 cut(s) | 490, 825, 995, 1056, 1401, 1727 |
| BssMI | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| BssNAI | GTATAC | 1 cut(s) | 1640 |
| BssNI | GRCGYC | 1 cut(s) | 1162 |
| BssT1I | CCWWGG | 4 cut(s) | 490, 825, 1056, 1401 |
| Bst1107I | GTATAC | 1 cut(s) | 1640 |
| Bst2UI | CCWGG | 6 cut(s) | 1069, 1375, 1582, 1728, 1831, 2205 |
| Bst4CI | ACNGT | 8 cut(s) | 319, 433, 878, 1298, 1737, 1854, 2245, 2264 |
| Bst6I | CTCTTC | 1 cut(s) | 1401 |
| BstACI | GRCGYC | 1 cut(s) | 1162 |
| BstBAI | YACGTR | 2 cut(s) | 339, 566 |
| BstC8I | GCNNGC | 5 cut(s) | 364, 1248, 1408, 1460, 1843 |
| BstDEI | CTNAG | 6 cut(s) | 378, 557, 840, 957, 2138, 2149 |
| BstDSI | CCRYGG | 2 cut(s) | 490, 995 |
| BstEII | GGTNACC | 1 cut(s) | 95 |
| BstF5I | GGATG | 7 cut(s) | 126, 151, 256, 301, 742, 1032, 1132 |
| BstFNI | CGCG | 2 cut(s) | 997, 1221 |
| BstKTI | GATC | 9 cut(s) | 16, 73, 667, 1063, 1099, 1122, 1349, 1794, 1876 |
| BstMAI | GTCTC | 6 cut(s) | 596, 598, 1362, 1409, 1927, 1939 |
| BstMBI | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 533, 1755, 2068 |
| BstNI | CCWGG | 6 cut(s) | 1069, 1375, 1582, 1728, 1831, 2205 |
| BstNSI | RCATGY | 2 cut(s) | 467, 760 |
| BstPI | GGTNACC | 1 cut(s) | 95 |
| BstSCI | CCNGG | 7 cut(s) | 99, 1067, 1373, 1580, 1726, 1829, 2203 |
| BstSFI | CTRYAG | 5 cut(s) | 432, 877, 1251, 1850, 2223 |
| BstSLI | GKGCMC | 1 cut(s) | 2314 |
| BstSNI | TACGTA | 1 cut(s) | 339 |
| BstUI | CGCG | 2 cut(s) | 997, 1221 |
| BstV1I | GCAGC | 7 cut(s) | 499, 1436, 1767, 1813, 1871, 2206, 2209 |
| BstV2I | GAAGAC | 4 cut(s) | 558, 697, 1157, 2169 |
| BstX2I | RGATCY | 2 cut(s) | 1060, 1346 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 981 |
| BstYI | RGATCY | 2 cut(s) | 1060, 1346 |
| BstZ17I | GTATAC | 1 cut(s) | 1640 |
| Bsu36I | CCTNAGG | 1 cut(s) | 557 |
| BsuI | GTATCC | 3 cut(s) | 842, 936, 1766 |
| BsuRI | GGCC | 2 cut(s) | 325, 366 |
| BtgI | CCRYGG | 2 cut(s) | 490, 995 |
| BtgZI | GCGATG | 1 cut(s) | 1442 |
| BtsCI | GGATG | 7 cut(s) | 126, 151, 256, 301, 742, 1032, 1132 |
| BtsIMutI | CAGTG | 4 cut(s) | 636, 1142, 2026, 2269 |
| BveI | ACCTGC | 1 cut(s) | 381 |
| Cac8I | GCNNGC | 5 cut(s) | 364, 1248, 1408, 1460, 1843 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1649 |
| Cfr13I | GGNCC | 3 cut(s) | 290, 494, 647 |
| Cfr42I | CCGCGG | 1 cut(s) | 998 |
| CseI | GACGC | 1 cut(s) | 1151 |
| CsiI | ACCWGGT | 1 cut(s) | 2203 |
| Csp6I | GTAC | 6 cut(s) | 320, 336, 686, 1339, 1532, 2256 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 824, 859, 1273, 1308 |
| CviQI | GTAC | 6 cut(s) | 320, 336, 686, 1339, 1532, 2256 |
| DdeI | CTNAG | 6 cut(s) | 378, 557, 840, 957, 2138, 2149 |
| DpnI | GATC | 9 cut(s) | 15, 72, 666, 1062, 1098, 1121, 1348, 1793, 1875 |
| DpnII | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| EaeI | YGGCCR | 1 cut(s) | 323 |
| Eam1104I | CTCTTC | 1 cut(s) | 1401 |
| EarI | CTCTTC | 1 cut(s) | 1401 |
| EciI | GGCGGA | 2 cut(s) | 327, 2124 |
| Ecl136II | GAGCTC | 2 cut(s) | 727, 1034 |
| Eco105I | TACGTA | 1 cut(s) | 339 |
| Eco130I | CCWWGG | 4 cut(s) | 490, 825, 1056, 1401 |
| Eco24I | GRGCYC | 2 cut(s) | 729, 1036 |
| Eco31I | GGTCTC | 3 cut(s) | 596, 1362, 1409 |
| Eco47I | GGWCC | 3 cut(s) | 290, 494, 647 |
| Eco53kI | GAGCTC | 2 cut(s) | 727, 1034 |
| Eco57I | CTGAAG | 4 cut(s) | 876, 1327, 1472, 1503 |
| Eco81I | CCTNAGG | 1 cut(s) | 557 |
| Eco91I | GGTNACC | 1 cut(s) | 95 |
| EcoICRI | GAGCTC | 2 cut(s) | 727, 1034 |
| EcoO65I | GGTNACC | 1 cut(s) | 95 |
| EcoRII | CCWGG | 6 cut(s) | 1067, 1373, 1580, 1726, 1829, 2203 |
| EcoT14I | CCWWGG | 4 cut(s) | 490, 825, 1056, 1401 |
| EcoT22I | ATGCAT | 2 cut(s) | 1018, 1177 |
| EcoT38I | GRGCYC | 2 cut(s) | 729, 1036 |
| ErhI | CCWWGG | 4 cut(s) | 490, 825, 1056, 1401 |
| FaqI | GGGAC | 4 cut(s) | 116, 922, 1490, 1537 |
| FauI | CCCGC | 1 cut(s) | 1601 |
| FauNDI | CATATG | 2 cut(s) | 721, 1778 |
| FbaI | TGATCA | 1 cut(s) | 1791 |
| FblI | GTMKAC | 2 cut(s) | 880, 1639 |
| Fnu4HI | GCNGC | 7 cut(s) | 513, 1425, 1756, 1827, 1885, 2220, 2223 |
| FokI | GGATG | 7 cut(s) | 113, 158, 263, 308, 749, 1039, 1139 |
| FriOI | GRGCYC | 2 cut(s) | 729, 1036 |
| Fsp4HI | GCNGC | 7 cut(s) | 513, 1425, 1756, 1827, 1885, 2220, 2223 |
| FspBI | CTAG | 9 cut(s) | 6, 138, 207, 1005, 1266, 1380, 1814, 2031, 2063 |
| GluI | GCNGC | 7 cut(s) | 513, 1425, 1756, 1827, 1885, 2220, 2223 |
| GsaI | CCCAGC | 2 cut(s) | 1083, 1762 |
| HaeIII | GGCC | 2 cut(s) | 325, 366 |
| HapII | CCGG | 3 cut(s) | 100, 293, 2315 |
| HgaI | GACGC | 1 cut(s) | 1151 |
| Hin1I | GRCGYC | 1 cut(s) | 1162 |
| HincII | GTYRAC | 2 cut(s) | 672, 1614 |
| HindII | GTYRAC | 2 cut(s) | 672, 1614 |
| HindIII | AAGCTT | 2 cut(s) | 1485, 1796 |
| HinfI | GANTC | 9 cut(s) | 626, 896, 953, 1047, 1478, 1646, 1723, 1898, 2051 |
| HpaI | GTTAAC | 1 cut(s) | 672 |
| HpaII | CCGG | 3 cut(s) | 100, 293, 2315 |
| HphI | GGTGA | 5 cut(s) | 173, 764, 1615, 2096, 2193 |
| Hpy166II | GTNNAC | 6 cut(s) | 497, 672, 881, 1614, 1640, 2024 |
| Hpy8I | GTNNAC | 6 cut(s) | 497, 672, 881, 1614, 1640, 2024 |
| Hpy99I | CGWCG | 2 cut(s) | 216, 714 |
| HpyAV | CCTTC | 6 cut(s) | 86, 1066, 1263, 1630, 1856, 1985 |
| HpyCH4III | ACNGT | 8 cut(s) | 319, 433, 878, 1298, 1737, 1854, 2245, 2264 |
| HpyCH4IV | ACGT | 4 cut(s) | 338, 565, 712, 1495 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 533, 1755, 2068 |
| HpyF3I | CTNAG | 6 cut(s) | 378, 557, 840, 957, 2138, 2149 |
| HpySE526I | ACGT | 4 cut(s) | 338, 565, 712, 1495 |
| Hsp92I | GRCGYC | 1 cut(s) | 1162 |
| Ksp22I | TGATCA | 1 cut(s) | 1791 |
| KspAI | GTTAAC | 1 cut(s) | 672 |
| KspI | CCGCGG | 1 cut(s) | 998 |
| Kzo9I | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| LmnI | GCTCC | 4 cut(s) | 541, 702, 1370, 1432 |
| Lsp1109I | GCAGC | 7 cut(s) | 499, 1436, 1767, 1813, 1871, 2206, 2209 |
| LweI | GCATC | 4 cut(s) | 264, 759, 1003, 1972 |
| MabI | ACCWGGT | 1 cut(s) | 2203 |
| MaeI | CTAG | 9 cut(s) | 6, 138, 207, 1005, 1266, 1380, 1814, 2031, 2063 |
| MaeII | ACGT | 4 cut(s) | 338, 565, 712, 1495 |
| MalI | GATC | 9 cut(s) | 15, 72, 666, 1062, 1098, 1121, 1348, 1793, 1875 |
| MbiI | CCGCTC | 1 cut(s) | 1608 |
| MboI | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| MboII | GAAGA | 8 cut(s) | 54, 563, 702, 784, 1157, 1388, 2174, 2240 |
| MflI | RGATCY | 2 cut(s) | 1060, 1346 |
| MhlI | GDGCHC | 3 cut(s) | 729, 1036, 2314 |
| MluI | ACGCGT | 1 cut(s) | 1219 |
| MlyI | GAGTC | 4 cut(s) | 890, 947, 1056, 1472 |
| Mph1103I | ATGCAT | 2 cut(s) | 1018, 1177 |
| MseI | TTAA | 2 cut(s) | 416, 671 |
| MslI | CAYNNNNRTG | 4 cut(s) | 468, 681, 755, 1021 |
| MspA1I | CMGCKG | 3 cut(s) | 997, 1450, 1758 |
| MspI | CCGG | 3 cut(s) | 100, 293, 2315 |
| MspR9I | CCNGG | 7 cut(s) | 101, 1069, 1375, 1582, 1728, 1831, 2205 |
| Mva1269I | GAATGC | 2 cut(s) | 170, 705 |
| MvaI | CCWGG | 6 cut(s) | 1069, 1375, 1582, 1728, 1831, 2205 |
| MvnI | CGCG | 2 cut(s) | 997, 1221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 533, 1755, 2068 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NcoI | CCATGG | 1 cut(s) | 490 |
| NdeI | CATATG | 2 cut(s) | 721, 1778 |
| NdeII | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| NlaIV | GGNNCC | 3 cut(s) | 1062, 1372, 2313 |
| NmeAIII | GCCGAG | 1 cut(s) | 1941 |
| NmuCI | GTSAC | 4 cut(s) | 395, 770, 1694, 1731 |
| NsiI | ATGCAT | 2 cut(s) | 1018, 1177 |
| NspI | RCATGY | 2 cut(s) | 467, 760 |
| PaqCI | CACCTGC | 1 cut(s) | 381 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 344 |
| PctI | GAATGC | 2 cut(s) | 170, 705 |
| PfeI | GAWTC | 5 cut(s) | 626, 1646, 1723, 1898, 2051 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1587, 2033 |
| PfoI | TCCNGGA | 1 cut(s) | 1067 |
| PkrI | GCNGC | 7 cut(s) | 514, 1426, 1757, 1828, 1886, 2221, 2224 |
| PleI | GAGTC | 4 cut(s) | 890, 947, 1055, 1472 |
| PpsI | GAGTC | 4 cut(s) | 890, 947, 1055, 1472 |
| Ppu21I | YACGTR | 2 cut(s) | 339, 566 |
| PsiI | TTATAA | 1 cut(s) | 450 |
| Psp124BI | GAGCTC | 2 cut(s) | 729, 1036 |
| Psp6I | CCWGG | 6 cut(s) | 1067, 1373, 1580, 1726, 1829, 2203 |
| PspEI | GGTNACC | 1 cut(s) | 95 |
| PspFI | CCCAGC | 2 cut(s) | 1079, 1758 |
| PspGI | CCWGG | 6 cut(s) | 1067, 1373, 1580, 1726, 1829, 2203 |
| PspN4I | GGNNCC | 3 cut(s) | 1062, 1372, 2313 |
| PspPI | GGNCC | 3 cut(s) | 290, 494, 647 |
| PstI | CTGCAG | 1 cut(s) | 2227 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1649 |
| PsuI | RGATCY | 2 cut(s) | 1060, 1346 |
| PvuII | CAGCTG | 2 cut(s) | 1450, 1758 |
| RsaI | GTAC | 6 cut(s) | 321, 337, 687, 1340, 1533, 2257 |
| RsaNI | GTAC | 6 cut(s) | 320, 336, 686, 1339, 1532, 2256 |
| RseI | CAYNNNNRTG | 4 cut(s) | 468, 681, 755, 1021 |
| SacI | GAGCTC | 2 cut(s) | 729, 1036 |
| SacII | CCGCGG | 1 cut(s) | 998 |
| SaqAI | TTAA | 2 cut(s) | 416, 671 |
| SatI | GCNGC | 7 cut(s) | 513, 1425, 1756, 1827, 1885, 2220, 2223 |
| Sau3AI | GATC | 9 cut(s) | 13, 70, 664, 1060, 1096, 1119, 1346, 1791, 1873 |
| Sau96I | GGNCC | 3 cut(s) | 290, 494, 647 |
| ScaI | AGTACT | 1 cut(s) | 1340 |
| SchI | GAGTC | 4 cut(s) | 890, 947, 1056, 1472 |
| ScrFI | CCNGG | 7 cut(s) | 101, 1069, 1375, 1582, 1728, 1831, 2205 |
| SduI | GDGCHC | 3 cut(s) | 729, 1036, 2314 |
| SexAI | ACCWGGT | 1 cut(s) | 2203 |
| SfaNI | GCATC | 4 cut(s) | 264, 759, 1003, 1972 |
| SfcI | CTRYAG | 5 cut(s) | 432, 877, 1251, 1850, 2223 |
| Sfr303I | CCGCGG | 1 cut(s) | 998 |
| SgrBI | CCGCGG | 1 cut(s) | 998 |
| SinI | GGWCC | 3 cut(s) | 290, 494, 647 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 468, 681, 755, 1021 |
| SmlI | CTYRAG | 2 cut(s) | 695, 898 |
| SmoI | CTYRAG | 2 cut(s) | 695, 898 |
| SnaBI | TACGTA | 1 cut(s) | 339 |
| SpeI | ACTAGT | 1 cut(s) | 1379 |
| SsiI | CCGC | 6 cut(s) | 312, 995, 997, 1608, 1624, 2109 |
| SspI | AATATT | 1 cut(s) | 1559 |
| SspMI | CTAG | 9 cut(s) | 6, 138, 207, 1005, 1266, 1380, 1814, 2031, 2063 |
| SstI | GAGCTC | 2 cut(s) | 729, 1036 |
| StyD4I | CCNGG | 7 cut(s) | 99, 1067, 1373, 1580, 1726, 1829, 2203 |
| StyI | CCWWGG | 4 cut(s) | 490, 825, 1056, 1401 |
| TaaI | ACNGT | 8 cut(s) | 319, 433, 878, 1298, 1737, 1854, 2245, 2264 |
| TaiI | ACGT | 4 cut(s) | 341, 568, 715, 1498 |
| TaqI | TCGA | 6 cut(s) | 170, 709, 729, 795, 951, 1204 |
| TatI | WGTACW | 2 cut(s) | 1338, 1531 |
| TfiI | GAWTC | 5 cut(s) | 626, 1646, 1723, 1898, 2051 |
| Tru1I | TTAA | 2 cut(s) | 416, 671 |
| Tru9I | TTAA | 2 cut(s) | 416, 671 |
| TscAI | CASTG | 4 cut(s) | 636, 1142, 2026, 2269 |
| TseFI | GTSAC | 4 cut(s) | 395, 770, 1694, 1731 |
| TseI | GCWGC | 7 cut(s) | 512, 1424, 1755, 1826, 1884, 2219, 2222 |
| Tsp45I | GTSAC | 4 cut(s) | 395, 770, 1694, 1731 |
| TspDTI | ATGAA | 7 cut(s) | 391, 486, 639, 1075, 1700, 2004, 2064 |
| TspGWI | ACGGA | 3 cut(s) | 229, 474, 2337 |
| TspRI | CASTG | 4 cut(s) | 636, 1142, 2026, 2269 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1587, 2033 |
| VpaK11BI | GGWCC | 3 cut(s) | 290, 494, 647 |
| XapI | RAATTY | 4 cut(s) | 56, 1328, 1707, 2304 |
| XbaI | TCTAGA | 1 cut(s) | 1265 |
| XceI | RCATGY | 2 cut(s) | 467, 760 |
| XmiI | GTMKAC | 2 cut(s) | 880, 1639 |
| XspI | CTAG | 9 cut(s) | 6, 138, 207, 1005, 1266, 1380, 1814, 2031, 2063 |
| ZrmI | AGTACT | 1 cut(s) | 1340 |
| Zsp2I | ATGCAT | 2 cut(s) | 1018, 1177 |