Rh5BG562500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000990
Physical Location & Seq
Reverse (-)
89161997 .. 89163837
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG562500.1

Sequence Viewer

Length: 279 bp
ATGTGGGTGGAAAACCATCAGAATAGCATTTTCTTCTATGAGCATTTCTCCGAGACGGACCCTTTCACTTTGGGCATTCAAACAGACTGGCAGCTGCAACAGATGATTCGCTTTGGCAATCACAGCCTTGTAGCCTCTGATTCAAGGTTCGGAACAAACAAATTAAAGACGAAAGATCCTTCATGGAAGTTGGCTGGGTTCATAGTGGATGATCCTCAGGCTGATGTACACACTATCAGGGAAGTGGACTACTGCATTAGAAAGTCTTCCTCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.79

Weight (kDa)

6.02

Isoelectric Point (pI)

23.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 170, 206
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 2 cut(s) 80, 144
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 2 cut(s) 170, 206
ApeKI GCWGC 2 cut(s) 91, 94
Asp700I GAANNNNTTC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 58
AvaII GGWCC 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 81, 103
BccI CCATC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 277
BisI GCNGC 2 cut(s) 92, 95
BlsI GCNGC 2 cut(s) 93, 96
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bse1I ACTGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 81, 103
BseYI CCCAGC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 47
BsmBI CGTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 2 cut(s) 175, 211
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 2 cut(s) 170, 206
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 175, 211
BstAUI TGTACA 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 178, 214
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 175, 211
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 81, 103
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 227
CviAII CATG 1 cut(s) 183
CviJI RGCY 5 cut(s) 94, 126, 134, 194, 221
CviKI_1 RGCY 5 cut(s) 94, 126, 134, 194, 221
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 177, 213
DpnII GATC 2 cut(s) 175, 211
Eco47I GGWCC 1 cut(s) 58
Eco81I CCTNAGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 1 cut(s) 186
FaiI YATR 3 cut(s) 39, 184, 203
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 92, 95
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 92, 95
FspBI CTAG 1 cut(s) 277
GluI GCNGC 2 cut(s) 92, 95
GsaI CCCAGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 106, 140
Hpy166II GTNNAC 2 cut(s) 229, 247
Hpy188I TCNGA 4 cut(s) 21, 52, 139, 152
Hpy8I GTNNAC 2 cut(s) 229, 247
HpyAV CCTTC 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 97, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 2 cut(s) 175, 211
LpnPI CCDG 4 cut(s) 73, 180, 203, 223
Lsp1109I GCAGC 2 cut(s) 81, 103
MaeI CTAG 1 cut(s) 277
MalI GATC 2 cut(s) 177, 213
MboI GATC 2 cut(s) 175, 211
MboII GAAGA 2 cut(s) 25, 258
MflI RGATCY 1 cut(s) 175
MluCI AATT 1 cut(s) 161
MnlI CCTC 2 cut(s) 145, 225
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 2 cut(s) 175, 211
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 60
PctI GAATGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 106, 140
PkrI GCNGC 2 cut(s) 93, 96
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 92, 95
Sau3AI GATC 2 cut(s) 175, 211
Sau96I GGNCC 1 cut(s) 58
SetI ASST 2 cut(s) 96, 149
SgeI CNNG 8 cut(s) 64, 100, 140, 156, 195, 207, 230, 250
SinI GGWCC 1 cut(s) 58
Sse9I AATT 1 cut(s) 161
SspMI CTAG 1 cut(s) 277
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 2 cut(s) 106, 140
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 2 cut(s) 91, 94
TspDTI ATGAA 2 cut(s) 171, 190
TspGWI ACGGA 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.