Rh5DG571100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000990
Physical Location & Seq
Forward (+)
87787091 .. 87796626
9536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG571100.1

Sequence Viewer

Length: 1239 bp
ATGGCTAGATGGGATGAGATACTGTCTTTTCCTGTACAGAATCCTCCAACTTTGGAGTTTTCCGCTGCTGATCTTGTACGTGTGGACGGTGTGGTCGAAGGGGTCTCTGTGGAGACCATAATGCAGAGACACACTGAATCCGTACAGAGAAAGGGTGGTCCATGTAATCGTGATGACCTCTTAATCCATAGGTATGTTCGCAGACAGGAGAGGAACATTCGACGTTCTACATATGAATTGGTTGAGGATGATGCAGTTAGCATCAGCATGTGGGTGGAAAACCATCAGAATAGCATCTTCTTCTATCAGGATTTCTCCAAGACAGACCCTTTTACTTTGGGCATTCAAACAGACTGGCAGTTGCAACAGATGATTCGCTTTGGCAATCACAGCCTTATAGCCTCTGATTCAAGGTTCGGAACAAACAAATTAAAGTATCCTGTTCACAGTATCCTTGTATTTAACCAAGACAACAAGGCCATTCCGGTAGCATGGATAGTGAATCCAAAATTTGCAAGTTCTGATACCCATAAATGGATGAGAGCTCTTTACAATAGAGTTAAGACGAAAGATCCTTCATGGAAGTTGGCTGGGTTCATAGTGGATGATCCTCAGGCTGATGTACACACTATCAGGGATGTATTTCAGTGCTCAGTGCTGATAAGCTTCTGGCGGGTTCGTCATGCATGGCATAAAAACTTGGTAAAGAAATGTTTGGACGACGAGATGCGAGCTACAATATCAAGAAGGCTTCATCAGGCAGTAGATGACATATGTCAACAACGAGGAACAGATGGTTTGTTTGCGGATTTCATGGAAGATTTTGTTGATGCATCAGATTTTGTGGATTACTTTAAGGCAACCTGGTATCCTAGAATAGTTCCTTATTTGGAGTACTTTAGTCAAACTCATAACTCTTGTGTCCCAATCAATGCTTCCACTGAAGCAATTACGGATCATTTTAGGGGAAATTTAGAACCTCCTATTGACTTAGAAAATCATTTTCCAGCTGACTTGCACAAGGCAGTTGTTTTTCGTGGAGCACCATGGAAGGTAGAGATTGGCCGGTGGCTTGCTGGTTGTGGCTCAATTTCTAATAAAGTCAACATTGTGGAGTTAATAGGTGGGAGTGGCTGCAAAAATGACTGCAGTGGTCGAGGTTTTTGTAATCGTGAATTGGGACAATGTCGGTGCTTTCATGGATATAGTGGTGAAAACAGAAGAACAAATGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

412

Amino Acids

47.4

Weight (kDa)

6.73

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AciI CCGC 3 cut(s) 63, 673, 806
AclWI GGATC 3 cut(s) 566, 602, 963
AcoI YGGCCR 1 cut(s) 1063
AcsI RAATTY 2 cut(s) 509, 970
AcuI CTGAAG 1 cut(s) 963
AfaI GTAC 5 cut(s) 36, 78, 144, 624, 896
AfiI CCNNNNNNNGG 1 cut(s) 534
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 347, 411
AjnI CCWGG 1 cut(s) 863
AjuI GAANNNNNNNTTGG 2 cut(s) 919, 951
AluBI AGCT 4 cut(s) 545, 666, 734, 1010
AluI AGCT 4 cut(s) 545, 666, 734, 1010
Alw21I GWGCWC 3 cut(s) 547, 653, 1045
Alw26I GTCTC 3 cut(s) 107, 109, 121
AlwI GGATC 3 cut(s) 566, 602, 963
AoxI GGCC 2 cut(s) 477, 1063
ApeKI GCWGC 2 cut(s) 65, 1134
ApoI RAATTY 2 cut(s) 509, 970
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 1223
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 612
BanII GRGCYC 1 cut(s) 547
Bbv12I GWGCWC 3 cut(s) 547, 653, 1045
BbvI GCAGC 2 cut(s) 52, 1121
BccI CCATC 3 cut(s) 3, 291, 788
BciT130I CCWGG 1 cut(s) 865
BciVI GTATCC 3 cut(s) 447, 461, 879
BcoDI GTCTC 3 cut(s) 107, 109, 121
BfaI CTAG 2 cut(s) 6, 873
BfmI CTRYAG 1 cut(s) 1147
BfuI GTATCC 3 cut(s) 447, 461, 879
BisI GCNGC 2 cut(s) 66, 1135
BlsI GCNGC 2 cut(s) 67, 1136
BmcAI AGTACT 1 cut(s) 896
Bme1390I CCNGG 1 cut(s) 865
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 6 cut(s) 241, 270, 303, 717, 820, 842
BoxI GACNNNNGTC 1 cut(s) 774
BsaAI YACGTR 1 cut(s) 80
BsaI GGTCTC 2 cut(s) 107, 109
BsaJI CCNNGG 1 cut(s) 1046
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse118I RCCGGY 1 cut(s) 1065
Bse1I ACTGG 1 cut(s) 359
Bse21I CCTNAGG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 865
BseDI CCNNGG 1 cut(s) 1046
BseGI GGATG 5 cut(s) 19, 253, 543, 610, 643
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 626, 666
BseNI ACTGG 1 cut(s) 359
BseXI GCAGC 2 cut(s) 52, 1121
BseYI CCCAGC 1 cut(s) 590
BshFI GGCC 2 cut(s) 479, 1065
BsiHKAI GWGCWC 3 cut(s) 547, 653, 1045
BsiSI CCGG 2 cut(s) 485, 1066
BslFI GGGAC 2 cut(s) 908, 1194
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 3 cut(s) 107, 109, 121
BsmFI GGGAC 2 cut(s) 908, 1194
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 2 cut(s) 479, 1065
Bso31I GGTCTC 2 cut(s) 107, 109
Bsp1286I GDGCHC 3 cut(s) 547, 653, 1045
Bsp1407I TGTACA 2 cut(s) 34, 622
Bsp143I GATC 4 cut(s) 70, 571, 607, 955
Bsp19I CCATGG 1 cut(s) 1046
BspACI CCGC 3 cut(s) 63, 673, 806
BspANI GGCC 2 cut(s) 479, 1065
BspCNI CTCAG 2 cut(s) 625, 665
BspMAI CTGCAG 1 cut(s) 1151
BspPI GGATC 3 cut(s) 566, 602, 963
BspTNI GGTCTC 2 cut(s) 107, 109
BsrFI RCCGGY 1 cut(s) 1065
BsrGI TGTACA 2 cut(s) 34, 622
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 1065
BssECI CCNNGG 1 cut(s) 1046
BssMI GATC 4 cut(s) 70, 571, 607, 955
BssT1I CCWWGG 1 cut(s) 1046
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 3 cut(s) 24, 89, 449
BstAUI TGTACA 2 cut(s) 34, 622
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 732, 1074
BstDEI CTNAG 3 cut(s) 612, 652, 991
BstDSI CCRYGG 1 cut(s) 1046
BstF5I GGATG 5 cut(s) 19, 253, 543, 610, 643
BstKTI GATC 4 cut(s) 73, 574, 610, 958
BstMAI GTCTC 3 cut(s) 107, 109, 121
BstMBI GATC 4 cut(s) 70, 571, 607, 955
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 1 cut(s) 865
BstNSI RCATGY 1 cut(s) 271
BstPAI GACNNNNGTC 1 cut(s) 774
BstSCI CCNGG 1 cut(s) 863
BstSFI CTRYAG 1 cut(s) 1147
BstV1I GCAGC 2 cut(s) 52, 1121
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 612
BsuI GTATCC 3 cut(s) 447, 461, 879
BsuRI GGCC 2 cut(s) 479, 1065
BtgI CCRYGG 1 cut(s) 1046
BtsCI GGATG 5 cut(s) 19, 253, 543, 610, 643
BtsI GCAGTG 1 cut(s) 1156
BtsIMutI CAGTG 5 cut(s) 132, 653, 660, 939, 1156
Cac8I GCNNGC 2 cut(s) 732, 1074
Cfr10I RCCGGY 1 cut(s) 1065
Cfr13I GGNCC 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 863
Csp6I GTAC 5 cut(s) 35, 77, 143, 623, 895
CviAII CATG 9 cut(s) 162, 268, 492, 579, 683, 687, 814, 1047, 1199
CviQI GTAC 5 cut(s) 35, 77, 143, 623, 895
DdeI CTNAG 3 cut(s) 612, 652, 991
DpnI GATC 4 cut(s) 72, 573, 609, 957
DpnII GATC 4 cut(s) 70, 571, 607, 955
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 1063
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 1046
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 2 cut(s) 107, 109
Eco47I GGWCC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 963
Eco81I CCTNAGG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 863
EcoT14I CCWWGG 1 cut(s) 1046
EcoT22I ATGCAT 2 cut(s) 688, 835
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 1046
FaeI CATG 9 cut(s) 165, 271, 495, 582, 686, 690, 817, 1050, 1202
FaqI GGGAC 2 cut(s) 908, 1194
FatI CATG 9 cut(s) 161, 267, 491, 578, 682, 686, 813, 1046, 1198
FauI CCCGC 1 cut(s) 666
FauNDI CATATG 2 cut(s) 232, 773
Fnu4HI GCNGC 2 cut(s) 66, 1135
FokI GGATG 5 cut(s) 26, 260, 550, 617, 650
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 2 cut(s) 66, 1135
FspBI CTAG 2 cut(s) 6, 873
GluI GCNGC 2 cut(s) 66, 1135
GsaI CCCAGC 1 cut(s) 594
HaeIII GGCC 2 cut(s) 479, 1065
HapII CCGG 2 cut(s) 485, 1066
Hin1II CATG 9 cut(s) 165, 271, 495, 582, 686, 690, 817, 1050, 1202
HincII GTYRAC 2 cut(s) 779, 1105
HindII GTYRAC 2 cut(s) 779, 1105
HindIII AAGCTT 1 cut(s) 664
HinfI GANTC 5 cut(s) 40, 137, 373, 407, 502
HpaII CCGG 2 cut(s) 485, 1066
HphI GGTGA 1 cut(s) 1223
Hpy166II GTNNAC 5 cut(s) 85, 445, 625, 779, 1105
Hpy188I TCNGA 5 cut(s) 288, 406, 419, 523, 838
Hpy188III TCNNGA 4 cut(s) 170, 308, 744, 1172
Hpy8I GTNNAC 5 cut(s) 85, 445, 625, 779, 1105
Hpy99I CGWCG 2 cut(s) 225, 725
HpyAV CCTTC 4 cut(s) 92, 585, 741, 1045
HpyCH4III ACNGT 3 cut(s) 24, 89, 449
HpyCH4IV ACGT 2 cut(s) 79, 223
HpyCH4V TGCA 9 cut(s) 124, 254, 364, 515, 686, 833, 1018, 1137, 1149
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 3 cut(s) 612, 652, 991
HpySE526I ACGT 2 cut(s) 79, 223
Hsp92II CATG 9 cut(s) 165, 271, 495, 582, 686, 690, 817, 1050, 1202
Kzo9I GATC 4 cut(s) 70, 571, 607, 955
LmnI GCTCC 1 cut(s) 1040
Lsp1109I GCAGC 2 cut(s) 52, 1121
LweI GCATC 6 cut(s) 241, 270, 303, 717, 820, 842
MabI ACCWGGT 1 cut(s) 863
MaeI CTAG 2 cut(s) 6, 873
MaeII ACGT 2 cut(s) 79, 223
MalI GATC 4 cut(s) 72, 573, 609, 957
MboI GATC 4 cut(s) 70, 571, 607, 955
MboII GAAGA 4 cut(s) 289, 292, 830, 1233
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 3 cut(s) 547, 653, 1045
MluCI AATT 7 cut(s) 236, 428, 509, 948, 970, 1089, 1175
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 9 cut(s) 54, 188, 204, 238, 412, 621, 779, 990, 1151
Mph1103I ATGCAT 2 cut(s) 688, 835
MseI TTAA 6 cut(s) 182, 431, 462, 561, 855, 1118
MslI CAYNNNNRTG 3 cut(s) 192, 266, 272
MspA1I CMGCKG 2 cut(s) 65, 1010
MspI CCGG 2 cut(s) 485, 1066
MspR9I CCNGG 1 cut(s) 865
Mva1269I GAATGC 1 cut(s) 342
MvaI CCWGG 1 cut(s) 865
MwoI GCNNNNNNNGC 1 cut(s) 390
NcoI CCATGG 1 cut(s) 1046
NdeI CATATG 2 cut(s) 232, 773
NdeII GATC 4 cut(s) 70, 571, 607, 955
NlaIII CATG 9 cut(s) 165, 271, 495, 582, 686, 690, 817, 1050, 1202
NsiI ATGCAT 2 cut(s) 688, 835
NspI RCATGY 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 5 cut(s) 40, 137, 373, 407, 502
PflFI GACNNNGTC 1 cut(s) 1185
PkrI GCNGC 2 cut(s) 67, 1136
Ppu21I YACGTR 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 863
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 863
PspPI GGNCC 1 cut(s) 158
PstI CTGCAG 1 cut(s) 1151
PsuI RGATCY 1 cut(s) 571
PsyI GACNNNGTC 1 cut(s) 1185
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 5 cut(s) 36, 78, 144, 624, 896
RsaNI GTAC 5 cut(s) 35, 77, 143, 623, 895
RseI CAYNNNNRTG 3 cut(s) 192, 266, 272
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 6 cut(s) 182, 431, 462, 561, 855, 1118
SatI GCNGC 2 cut(s) 66, 1135
Sau3AI GATC 4 cut(s) 70, 571, 607, 955
Sau96I GGNCC 1 cut(s) 158
ScaI AGTACT 1 cut(s) 896
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 3 cut(s) 547, 653, 1045
SexAI ACCWGGT 1 cut(s) 863
SfaNI GCATC 6 cut(s) 241, 270, 303, 717, 820, 842
SfcI CTRYAG 1 cut(s) 1147
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 3 cut(s) 192, 266, 272
Sse9I AATT 7 cut(s) 236, 428, 509, 948, 970, 1089, 1175
SsiI CCGC 3 cut(s) 63, 673, 806
SspMI CTAG 2 cut(s) 6, 873
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 3 cut(s) 24, 89, 449
TaiI ACGT 2 cut(s) 82, 226
TaqI TCGA 3 cut(s) 96, 220, 1156
TasI AATT 7 cut(s) 236, 428, 509, 948, 970, 1089, 1175
TatI WGTACW 3 cut(s) 34, 622, 894
TfiI GAWTC 5 cut(s) 40, 137, 373, 407, 502
Tru1I TTAA 6 cut(s) 182, 431, 462, 561, 855, 1118
Tru9I TTAA 6 cut(s) 182, 431, 462, 561, 855, 1118
TscAI CASTG 5 cut(s) 139, 653, 660, 946, 1156
TseI GCWGC 2 cut(s) 65, 1134
TspDTI ATGAA 6 cut(s) 249, 567, 586, 743, 802, 1187
TspGWI ACGGA 2 cut(s) 130, 968
TspRI CASTG 5 cut(s) 139, 653, 660, 946, 1156
Tth111I GACNNNGTC 1 cut(s) 1185
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 509, 970
XceI RCATGY 1 cut(s) 271
XspI CTAG 2 cut(s) 6, 873
ZrmI AGTACT 1 cut(s) 896
Zsp2I ATGCAT 2 cut(s) 688, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.